PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15104.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 296aa    MW: 33286.2 Da    PI: 6.956
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15104.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-092469346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE + + +a + +      +W+++a++++ g++ ++++  + +
        PK15104.1 24 EWTKEENKEFERALAIYDETtpnRWAKVAAMIP-GKSVYDVIKQYKD 69
                     7*****************99*************.*******999876 PP
2Myb_DNA-binding37.45.8e-12123167347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
        PK15104.1 123 PWTKDEHTRFLLGLMKYGKGDWRNISRNFVITKTPTQVASHAQKY 167
                      8*****************************889***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.9382073IPR017884SANT domain
SMARTSM007171.2E-92173IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-112377IPR009057Homeodomain-like
CDDcd001671.25E-82470No hitNo description
PfamPF002491.3E-72470IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-9114168IPR009057Homeodomain-like
PROSITE profilePS5129417.438116172IPR017930Myb domain
SuperFamilySSF466895.68E-15118172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-16119171IPR006447Myb domain, plants
SMARTSM007176.2E-10120170IPR001005SANT/Myb domain
PfamPF002492.6E-10123167IPR001005SANT/Myb domain
CDDcd001671.62E-8123167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
METLHPTSFI STSSWLFQGS QSSEWTKEEN KEFERALAIY DETTPNRWAK VAAMIPGKSV  60
YDVIKQYKDL EDDVSDIEAG RVPIPGYLAS PFPFELVDDR DCFRKRPPSS ARGSDHERKK  120
GVPWTKDEHT RFLLGLMKYG KGDWRNISRN FVITKTPTQV ASHAQKYYLR QHSGGKDKRR  180
PSIHDFTTYN LTETTTTSEN NTASFLDHSS VIPSLQISAE EAQKVLRDWN IPSDEEALMA  240
LGSACGNLFM SSSSPYDIAP NGLKLPLGQN LFGGSACYAA HSKPQASIFE VQTSRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1525871173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095053.11e-152transcription factor DIVARICATA
SwissprotQ8S9H71e-86DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2P5FHT71e-175A0A2P5FHT7_TREOI; GAMYB transcription factor
STRINGXP_010095053.11e-151(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.25e-90MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]