PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14939.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 874aa    MW: 97778.3 Da    PI: 4.771
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14939.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.4e-11816868147
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg....kgRtlkqcksrwqky 47 
                      + +WTteE+++l+++v++++ +   Wk+I +       +gRt+ ++k++w++ 
        PK14939.1 816 KVPWTTEEEQKLKEGVQKFPDEknMWKKILEFGDsvfmEGRTAIDLKDKWRNM 868
                      579*****************99*9*****9987799999************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579038.86E-8537591IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.8E-6539588IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002490.0044542587IPR001965Zinc finger, PHD-type
PROSITE profilePS5129412.839811873IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-13811870IPR009057Homeodomain-like
SuperFamilySSF466896.03E-12813870IPR009057Homeodomain-like
SMARTSM007172.5E-6815871IPR001005SANT/Myb domain
PfamPF002493.1E-8816867IPR001005SANT/Myb domain
CDDcd116602.09E-15817870No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MASFKEVDLF LLCDVMEAAP ELPDGLGKNT REIVALRCLE QLSSVNEIAS DVPSAQGLKV  60
GFDLSESCED VLQRIVEDTS GRILRISRME LSRWDIQPFV AHKRACMPKC ALEQLKDAIL  120
DGTHPYADFL RDKGHLATSL EDANLMGDSN HDSVTTRPCF TGTDVQNEVN PDILIPEKRN  180
KPLGENHHDR AILPTKRDRS GSAREAMACN VHEDCNGELN SELQHTNAKR LKQYESSGSQ  240
FVEQNQFPLH GNEALEDSSG RDAPVTTREL PENELATMGE SRVLENGFDD ESNKNNDDHS  300
NKDMVQTPCN SPVMPKINSG GDEANQPLSV DEANVVSNHF AQLGGAFEPV EQNSVALHGK  360
EPTKDSSKLE VQVPVEEPKL TEDDCTVSNR SQPITGDEIY KNQSENFYDA PSLMQDATRD  420
DTHQNLSVDG TNNASNPSTE PIGVPSHGTV DKIPTKESKR IREHDFPFQE RNPMSNDRYQ  480
QNIIADEAKE NTNDCGEEEM PCDIDGYRNE MVDVDKKKLE FLQAQCTVGR DSLIVDWTEK  540
YLCMKCNKAG SLLVCSTNNC QLVIHEKCGG SLAKFDDKGN FYCPFCAYSL AIMEYIEAKK  600
RSSVANKELA AFILMGSKRY PKESDRSLIK EINHSPGGNA DENVLRKNLE NEHLGAREKN  660
EGNLVELSVN EEDDQQCQKI KVDQAEISAQ HNNNDSNRGG CHGSEGEREG GEKMAGECPS  720
ARTEGQQNEV PHNASGRNSD VNLVNEGKSN TGIQRKLLKD QDIYTKKRSV TENHDSSGDD  780
SENDDHESNI SDYCILFRKR KKPRSDPATP QKRRKKVPWT TEEEQKLKEG VQKFPDEKNM  840
WKKILEFGDS VFMEGRTAID LKDKWRNMCK GMSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192199LPTKRDRS
2797801RKRKK
3797803RKRKKPR
4797815RKRKKPRSDPATPQKRRKK
5799815RKKPRSDPATPQKRRKK
6800814KKPRSDPATPQKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018435.10.0uncharacterized protein LOC21385959
TrEMBLA0A2P5F1Q10.0A0A2P5F1Q1_TREOI; GAMYB transcription factor
STRINGXP_010091860.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.26e-08MYB_related family protein