PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK14882.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 82aa MW: 9425.45 Da PI: 8.4854 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 43.7 | 4.6e-14 | 3 | 81 | 285 | 362 |
GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362 vE+ + ++i+n+va+eg+er+ r+ + Wr+ + ++G+++++ls + qa+l++++++ + ++ + ++l++gW PK14882.2 3 VEATYCFKAIRNIVATEGKERNIRNVKIDVWRAFFARFGMEELELSPSSIYQANLIVNRFPsGTYCTLGMNGKCLMMGW 81 899999*******************************************************555568889999****** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 8.946 | 1 | 72 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-11 | 3 | 81 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
XEVEATYCFK AIRNIVATEG KERNIRNVKI DVWRAFFARF GMEELELSPS SIYQANLIVN 60 RFPSGTYCTL GMNGKCLMMG WX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028947847.1 | 2e-33 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2P5CVG0 | 5e-40 | A0A2P5CVG0_PARAD; GRAS transcription factor | ||||
STRING | XP_008351161.1 | 5e-33 | (Malus domestica) | ||||
STRING | XP_008390567.1 | 7e-33 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-08 | RGA-like 2 |