PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK14284.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 533aa MW: 57897.7 Da PI: 6.5049

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK14284.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.5	1.5e-05	417	454	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L PK14284.1 417 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 454 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	405	454	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-11	415	468	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.08E-5	415	459	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-8	419	462	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MAEEFQIQGG ICGGGNWWNP SRSVFSAAAA LPCSMGSFGW PNNIISHDLL DIKMTRSSSS 60 SGDETKIHDD HSCNNIFQDQ KSLGHHLQTD DHISNGILNI DSASSLQMMG YGLSTSPTSD 120 FTTNQPFISS RSSNNINNGR SERSNNNFYS ILQQDHLGSA KLNYENDSSS QIQKDCWTSC 180 TTATTATNPP PKDFSGNDIM DTSATSQALS AGFPVSSSPF EYTSATLLQN LFECETTATT 240 TTCTATATSQ LAAHEQSFGN SNINQLSVNI TNSNYANNNN IWPRFSPLIL SSRPSAPIPS 300 PSEASGLHFS NNTPFWNASS LPATAAPNDG VFPNSIQQSQ AQAQQLRYVT PKFEEKHHKC 360 NNYVTNNKAN SNMEDISHES AGSVSKKSSN STTGNDQPMV KRPRIETPSP LPTFKVRKEK 420 LGDRITALQQ LVSPFGKTDT ASVLHEAIEY IKFLHDQVSV LSTPYMKNNG AAVQANQQGS 480 NKLVKKQDEL SPKQDLKSRG LCLVPISSTF PVANETTADF WTPTSSFGGA FIR

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MAEEFQIQGG ICGGGNWWNP SRSVFSAAAA LPCSMGSFGW PNNIISHDLL DIKMTRSSSS  60
SGDETKIHDD HSCNNIFQDQ KSLGHHLQTD DHISNGILNI DSASSLQMMG YGLSTSPTSD  120
FTTNQPFISS RSSNNINNGR SERSNNNFYS ILQQDHLGSA KLNYENDSSS QIQKDCWTSC  180
TTATTATNPP PKDFSGNDIM DTSATSQALS AGFPVSSSPF EYTSATLLQN LFECETTATT  240
TTCTATATSQ LAAHEQSFGN SNINQLSVNI TNSNYANNNN IWPRFSPLIL SSRPSAPIPS  300
PSEASGLHFS NNTPFWNASS LPATAAPNDG VFPNSIQQSQ AQAQQLRYVT PKFEEKHHKC  360
NNYVTNNKAN SNMEDISHES AGSVSKKSSN STTGNDQPMV KRPRIETPSP LPTFKVRKEK  420
LGDRITALQQ LVSPFGKTDT ASVLHEAIEY IKFLHDQVSV LSTPYMKNNG AAVQANQQGS  480
NKLVKKQDEL SPKQDLKSRG LCLVPISSTF PVANETTADF WTPTSSFGGA FIR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024030960.1	1e-129	transcription factor bHLH112 isoform X2
TrEMBL	A0A2P5AH25	1e-167	A0A2P5AH25_PARAD; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRING	XP_010111014.1	1e-128	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	4e-53	bHLH family protein