PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13658.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 26372.5 Da    PI: 8.4182
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13658.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.77.6e-29958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               +rienk+nrqv+fskRrng+lKKA+EL vLCdaev +iifss+gklye+ 
  PK13658.1  9 ERIENKINRQVSFSKRRNGLLKKAYELHVLCDAEVGLIIFSSRGKLYEFG 58
               69**********************************************95 PP
2K-box74.33.3e-25761724100
      K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +++++e ++ ++l  e+ kLk+++e+Lqr+ Rh+ Ge+Le+L lkeLq+Le++L++ l++ R++K ++ll+ +ee ++  ++l+e+n++L++klee
  PK13658.1  76 LQNNNVEGEEPQNLILEIPKLKAKYESLQRTERHFHGENLEELGLKELQNLEKRLDRTLSQARQHKWQMLLDRLEEIRQNDHSLRETNEQLKSKLEE 172
                57888999**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.342161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-37160IPR002100Transcription factor, MADS-box
CDDcd002652.18E-40278No hitNo description
SuperFamilySSF554552.49E-31277IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014865.0E-2085170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.36986176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKVVLER IENKINRQVS FSKRRNGLLK KAYELHVLCD AEVGLIIFSS RGKLYEFGSS  60
DLNTIVERYR QSTYALQNNN VEGEEPQNLI LEIPKLKAKY ESLQRTERHF HGENLEELGL  120
KELQNLEKRL DRTLSQARQH KWQMLLDRLE EIRQNDHSLR ETNEQLKSKL EEGRNKGRSN  180
KNQGNDIDPH AENDYDTTYN PDSIQPNNHN LIYTTKGRII DTFPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-21169169MEF2C
5f28_B6e-21169169MEF2C
5f28_C6e-21169169MEF2C
5f28_D6e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031529.15e-84MADS-box transcription factor 17 isoform X2
SwissprotQ8LLR11e-68MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A2P5D9J63e-88A0A2P5D9J6_PARAD; MADS-box transcription factor
STRINGXP_008234477.11e-73(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.14e-51AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]