PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13537.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TALE
Protein Properties Length: 469aa    MW: 51639.4 Da    PI: 9.1765
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13537.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.8e-104204571954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  PK13537.2 420 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 457
                664459******************************88 PP
2BELL125.22.6e-40282353172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                erqe+q+kkakL+++l+eV++rY+qy++q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  PK13537.2 282 ERQEIQMKKAKLITMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQI 353
                79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.6E-66203351IPR006563POX domain
PfamPF075264.1E-51208350IPR006563POX domain
PROSITE profilePS5007112.309398461IPR001356Homeobox domain
CDDcd000869.02E-12401462No hitNo description
SMARTSM003895.3E-9401465IPR001356Homeobox domain
SuperFamilySSF466896.42E-17402467IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-29404467IPR009057Homeodomain-like
PfamPF059201.8E-18418457IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MATYFHGNSD IQAPDGGLQT LVLMNPGGYI PYSDTPPPPS ATGNLIFLNS AANSLAQHHP  60
NISHAPQSHQ QTTQQFVTAI PSPHHHHHHH QQDPNNSQQS MQQQTQQHDF SALHGFMPRV  120
QYNLWNSPDQ SAAARETPRS QQQGGLSLTL SSQQLGGFGS FRSDREIPSP VQTQGQGPAV  180
SGEDMRVSGG SSSSVSGVTN GVPGIQSVLL SSKYLKAAQE LLDEVVNVGN EMRNEPFSKK  240
GTNSSQQSKP AGESSAAASG DGSPIATGET SGKRASELTP AERQEIQMKK AKLITMLDEV  300
EQRYRQYHHQ MQIVISSFEQ AAGIGSARTY TALALQTISK QFRCLKDAIT GQIRAANKSL  360
GEEDCLNGAG KIEGSRLKYV DHHLRQQRAL QQLGMIQQNA WRPQRGLPER SVSVLRAWLF  420
EHFLHPYPKD SDKHMLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16407465563Homeobox protein Meis2
3k2a_B4e-16407465563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868214.10.0BEL1-like homeodomain protein 1
RefseqXP_015868215.10.0BEL1-like homeodomain protein 1
RefseqXP_015868216.10.0BEL1-like homeodomain protein 1
RefseqXP_015868217.10.0BEL1-like homeodomain protein 1
RefseqXP_015868218.10.0BEL1-like homeodomain protein 1
RefseqXP_015900418.10.0BEL1-like homeodomain protein 1
RefseqXP_015900419.10.0BEL1-like homeodomain protein 1
RefseqXP_015900420.10.0BEL1-like homeodomain protein 1
RefseqXP_015900421.10.0BEL1-like homeodomain protein 1
RefseqXP_015900422.10.0BEL1-like homeodomain protein 1
RefseqXP_015900424.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-147BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2P5FI180.0A0A2P5FI18_TREOI; Homeodomain transcription factor
STRINGXP_007162972.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-127BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]