PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK13380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 252aa MW: 28549.7 Da PI: 6.9646 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 90 | 3.2e-28 | 88 | 175 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p PK13380.1 88 FYNAYATRIGFIIRVSKLSRSRRDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVTSGKWVVTKFVKEHTHPLTP 175 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-25 | 88 | 175 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
XEFGVDGDVN GEILRNSVEV DNSRGGDENE TGGSSVEGAF QHDHDEKMNQ DSPDGDMIPV 60 GVPTTSLVPA DEPFVGQEFD SEAAAHAFYN AYATRIGFII RVSKLSRSRR DGTAIGRALV 120 CNKEGYRMPD KREKIVRQRA ETRVGCRAMI LVRKVTSGKW VVTKFVKEHT HPLTPGKGRR 180 DCIYDQYPNE HDKIRELSQQ LAIEKKRAAT YKRHLELIFE HIEEHNESLS KKIHHIVESV 240 KEVETKEQQG HR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010097543.2 | 1e-165 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2P5CSI9 | 1e-176 | A0A2P5CSI9_PARAD; FHY3/FAR1 family | ||||
STRING | XP_010097543.1 | 1e-165 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-88 | FAR1 family protein |