PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12736.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TCP
Protein Properties Length: 491aa    MW: 51447.1 Da    PI: 6.7648
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12736.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.47.3e-40882331110
        TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 
                +a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s +           
  PK12736.1  88 PAPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSLPshirssyynpn 187
                589**************************************************************88888777666666666664444445555566666 PP

        TCP  89 ..............................kaaksaakskksqksaasalnl 110
                                              +      +++++++s+a+ ln+
  PK12736.1 188 fsvpssarrtsssffpgiglspssennnsnN------SNNSNNNSTATLLNF 233
                6666666666656666665555432222220......222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.3E-4093287IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92395149IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
XINTNTNTNT SNSNNITDPN FPFQLLEKKE EEASCTSSSA AYPSLAISAG TTADLSTTTS  60
CSTSGANKST SATAIVVAGA AETSLKKPAP KRTSTKDRHT KVDGRGRRIR MPALCAARVF  120
QLTRELGHKS DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSMSLPSHIR  180
SSYYNPNFSV PSSARRTSSS FFPGIGLSPS SENNNSNNSN NSNNNSTATL LNFQSPAASS  240
AVNFHHSMLQ AKQELRDATT TLDFSESASG EDGMGGRNKR RQATAEQELN QMGSYLMQSS  300
GTGSVPASHH HGGQIPANFW MVANSNSQVM SGHHDPIWAF NPSVQNSGLY RGTMSSGLHF  360
MNFPPPFALL PSQQLGASND GGGGGGSGGN NLSGGGDGHL GMLTGGLNPY RHLSGTGVSD  420
SQASGSHSHH GDGGGGGGDD RHDTIVATTH RSIGDHDDDD DDYMGMVVLV LVLVIFLHMC  480
SSLMCNTTRE V
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826533.11e-150PREDICTED: transcription factor TCP14
RefseqXP_021820713.11e-150transcription factor TCP15-like
TrEMBLA0A2P5F7900.0A0A2P5F790_TREOI; TCP transcription factor
STRINGEMJ103831e-148(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.13e-53TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14