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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PK12627.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family | bHLH | ||||||||
| Protein Properties | Length: 218aa MW: 25373.9 Da PI: 7.3457 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 33.6 | 6.8e-11 | 22 | 70 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
+++E++RR++++ f++L +llP++ +s+ l+ + + +A++YIksL+
PK12627.1 22 RKIVEKNRRNHMKVLFSKLNSLLPPQ---NSREaLTLPDQVDEAIKYIKSLE 70
5799*********************8...67777****************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 11.338 | 17 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 6.67E-11 | 18 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 2.39E-4 | 19 | 69 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 8.8E-11 | 21 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 4.3E-7 | 23 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.7E-4 | 23 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0050832 | Biological Process | defense response to fungus | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 218 aa Download sequence Send to blast |
MEDHRDCNRH HSQSSSVTKI ERKIVEKNRR NHMKVLFSKL NSLLPPQNSR EALTLPDQVD 60 EAIKYIKSLE AKVKKSKEKK ELMSKKRSYS SSFEKENNKV MGLGSIRSSP KLEIHEMGSI 120 IEIVLITGQD NQFIFYEIIR ILHEERADVI NAKYSVFGDS IFHLVHAEMA ESIFTFGGTK 180 ISERVKRFVS GCCSDVESQP DHQYWWDDFE IHPELLEF |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010091496.1 | 1e-92 | transcription factor bHLH162 | ||||
| TrEMBL | A0A2P5DNK8 | 1e-103 | A0A2P5DNK8_TREOI; Basic helix-loop-helix transcription factor | ||||
| STRING | XP_010091496.1 | 5e-92 | (Morus notabilis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF906 | 34 | 98 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G20970.1 | 5e-31 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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