PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11867.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 437aa    MW: 48068.4 Da    PI: 8.8916
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11867.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-32192248360
                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers  d+++ ei+Y+geHnh+k
  PK11867.2 192 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCAVKKKVERSL-DGQIAEIVYKGEHNHSK 248
                9***************************************.***************85 PP
2WRKY104.27.1e-33362418359
                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k+ver+++dpk +++tYeg+Hnh+
  PK11867.2 362 DGFRWRKYGQKVVKGNPYPRSYYRCTSVKCNVRKHVERASDDPKSFITTYEGKHNHD 418
                9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-29185249IPR003657WRKY domain
SuperFamilySSF1182901.44E-25188249IPR003657WRKY domain
SMARTSM007744.7E-36190248IPR003657WRKY domain
PfamPF031068.5E-25192246IPR003657WRKY domain
PROSITE profilePS5081123.342192249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-33347420IPR003657WRKY domain
PROSITE profilePS5081134.704355420IPR003657WRKY domain
SuperFamilySSF1182907.45E-28359420IPR003657WRKY domain
SMARTSM007744.1E-38360419IPR003657WRKY domain
PfamPF031064.5E-26362418IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MNVKESERTV ISKPVASRPS CSSFRSFSEL LAGALHTSPS NTSSEAAVPA TIRPKTVRFK  60
PTTVHGAAPD LLSSQAAEIC GAAVCSKPDG GSTVVHKPLA KVVSKTTVSL LATMGNFNNS  120
FQQIHSQAQH SQQDKESFLS QHSSYLNPIA SVRAKSNTMV VPSKIVSLPQ NQEDEDPQSL  180
PSIANSDRPS YDGYNWRKYG QKQVKGSEYP RSYYKCTYPN CAVKKKVERS LDGQIAEIVY  240
KGEHNHSKPQ PAKRNSSSVT PALADTTPSL DANHQLWHSQ LNEKNECCEG EVGVLQAHSC  300
QGKASQLYDS LSVEPEAEDD EPRHKRRKGE NQSHEAGTSG GEGIQEGRVM QNSNDLENIS  360
GDGFRWRKYG QKVVKGNPYP RSYYRCTSVK CNVRKHVERA SDDPKSFITT YEGKHNHDMP  420
IKSTPNLVSS EIHTKAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-31192420177Probable WRKY transcription factor 4
2lex_A5e-31192420177Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276251e-58KT827625.1 Manihot esculenta WRKY transcription factor 50 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899555.10.0WRKY transcription factor 44
TrEMBLA0A2P5FXH40.0A0A2P5FXH4_TREOI; WRKY domain containing protein
STRINGXP_010100844.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.13e-89WRKY family protein