PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11782.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 577aa    MW: 63853.5 Da    PI: 8.1072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11782.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.8e-15117166255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr++k +g+Wv eIr p++   r++ ++g+f tae Aa a+++ +++l+g
  PK11782.1 117 HYRGVRQRK-SGKWVTEIRNPRS---RAKAWIGTFSTAEAAALAYDETALRLYG 166
                8********.7*********954...49***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.2E-27116175IPR001471AP2/ERF domain
CDDcd000181.17E-26116175No hitNo description
SuperFamilySSF541719.15E-18117175IPR016177DNA-binding domain
SMARTSM003804.2E-29117180IPR001471AP2/ERF domain
PfamPF008471.1E-10117166IPR001471AP2/ERF domain
PROSITE profilePS5103221.707117174IPR001471AP2/ERF domain
PRINTSPR003676.0E-7118129IPR001471AP2/ERF domain
PRINTSPR003676.0E-7140156IPR001471AP2/ERF domain
PROSITE profilePS5104438.8197274IPR004181Zinc finger, MIZ-type
PfamPF028919.1E-21208256IPR004181Zinc finger, MIZ-type
Gene3DG3DSA:3.30.40.105.3E-5209293IPR013083Zinc finger, RING/FYVE/PHD-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
QVDNVETSAC IITPQQVNFI VNGRGVDKRT NVYVDAGPQM PTNVTPLLKY GTNLLQVAGQ  60
FNSHYVIVVA FMRETKLCEL PVLPDYIQPP ADGVDSEHSK SRTLQDDLPR NIVRKKHYRG  120
VRQRKSGKWV TEIRNPRSRA KAWIGTFSTA EAAALAYDET ALRLYGRKAI LNFPERAKAK  180
GKSRTKTAAT STRDHQLDLD LIEGPSRISL NCPISYTRIR TPVKGHLCKH LQCFDFNNYI  240
DINSRRPSWR CPHCNQHVCY SEIRIDQKMV KVLKEVGNNV TDVIISTDGS WKVDQENDNS  300
DKANDTNLGC RKEKSELQAS TATPNDVPSI MDLTSDDDNE MDINVCDIDD MNPSKGDLSS  360
SPDSSNIENQ NFDDQVEDTN WTALYNSPDL STTVWSEALF GPASQSNPAT IVHTPHEADD  420
RVNTNLIASE MHSGVTPITI QVPPTQSPAL QTPQQRNTSS AVPSPGGLSP TDTVYSDMER  480
QKHFFQSLIK QPPQVANVVP SSSQPSLVTQ GRPRRAAAKS MNLASEQNWR PAGRMRGSLT  540
GQAYSSALNR LMIKPTQSPK PSQATTTPSV PAPPSHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-19114179268ATERF1
3gcc_A8e-19114179268ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031974.17e-85E4 SUMO-protein ligase PIAL2 isoform X1
RefseqXP_024031977.15e-85E4 SUMO-protein ligase PIAL2 isoform X3
TrEMBLA0A2P5FJ101e-101A0A2P5FJ10_TREOI; E3 SUMO protein ligase
STRINGXP_008348548.13e-72(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-16ERF family protein