PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK11776.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bZIP

Protein Properties

Length: 349aa MW: 39449.9 Da PI: 6.5221

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK11776.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.5	5.2e-12	61	101	2	42
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 +++k++rr+++NReAAr+sR+RKka++++Le+ +L + PK11776.1 61 PADKVQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLE 101 689****************************8666665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.3E-8	60	109	No hit	No description
SMART	SM00338	2.1E-6	60	118	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-8	62	103	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.99	62	106	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.38E-7	64	104	No hit	No description
CDD	cd14708	2.25E-21	64	116	No hit	No description
PROSITE pattern	PS00036	0	67	82	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-30	152	226	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MGAYEPIHQM GMWGENFKTN GTLNTPPSIL VDGDELNTQS EDTSNGILGH SDKFYLEGTK 60 PADKVQRRLA QNREAARKSR LRKKAYVQQL ETSRLKLVQL EQELERARKQ GLYVGSGGLD 120 ANRLGYSGAT DAGITAFEME YAHWVEEQNR LVCELRTALH AHIGDGELRM LVESSMNHYF 180 KLFSMKSMAA KADVFYVMSG MWKTSAERFF LWIGGFRPSE LLKVLEPHLE PLTDNQLLDV 240 YNLRQSCQQA EDALSQGMEK LQQTLAESVA AGQLGEGNYI PQLPTAMERL EALVCFLNQA 300 DHLRQETLTQ MARILTTRQA ARGLLAMGEY FQRLWALSSL WATRPREPA

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MGAYEPIHQM GMWGENFKTN GTLNTPPSIL VDGDELNTQS EDTSNGILGH SDKFYLEGTK  60
PADKVQRRLA QNREAARKSR LRKKAYVQQL ETSRLKLVQL EQELERARKQ GLYVGSGGLD  120
ANRLGYSGAT DAGITAFEME YAHWVEEQNR LVCELRTALH AHIGDGELRM LVESSMNHYF  180
KLFSMKSMAA KADVFYVMSG MWKTSAERFF LWIGGFRPSE LLKVLEPHLE PLTDNQLLDV  240
YNLRQSCQQA EDALSQGMEK LQQTLAESVA AGQLGEGNYI PQLPTAMERL EALVCFLNQA  300
DHLRQETLTQ MARILTTRQA ARGLLAMGEY FQRLWALSSL WATRPREPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00586	DAP	Transfer from AT5G65210	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024023656.1	0.0	transcription factor TGA1 isoform X2
Swissprot	Q39237	0.0	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2P5BZI6	0.0	A0A2P5BZI6_TREOI; Basic-leucine zipper transcription factor
STRING	XP_010099919.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]