PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11717.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 207aa    MW: 23542.9 Da    PI: 7.8547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11717.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-17248248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+W+ eEd++l+d+++q+G g+W+t ++  g+ R++k+c++rw +yl
        PK11717.1  2 GAWSIEEDQKLIDYINQHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 48
                     79*****************************99************97 PP
2Myb_DNA-binding52.31.3e-165499148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
        PK11717.1 54 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 99
                     8999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.527148IPR017930Myb domain
SMARTSM007171.3E-8150IPR001005SANT/Myb domain
SuperFamilySSF466895.74E-28295IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-22255IPR009057Homeodomain-like
PfamPF002499.5E-15248IPR001005SANT/Myb domain
CDDcd001672.31E-10348No hitNo description
PROSITE profilePS5129427.00449103IPR017930Myb domain
SMARTSM007171.1E-1553101IPR001005SANT/Myb domain
PfamPF002492.9E-155499IPR001005SANT/Myb domain
CDDcd001671.59E-115699No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2656104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
XGAWSIEEDQ KLIDYINQHG EGCWRTLPKA AGLLRCGKSC RLRWINYLRP DLKRGNFAED  60
EEDLIIKLHA LLGNRWSLIA GRLPGRTDNE IKNYWNSHLR RKLINMGIDP NNHRLKTTTN  120
TTSPPLSFPL NCANNNNMRT TTTTSSAALP NISPKNERVP AKPHGEDHYD VSDTGSCLLE  180
DNNQDYFSTC SHQRLLPDLN LDLTLNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2721038108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093406.21e-88transcription factor MYB8
SwissprotQ388512e-70MYB6_ARATH; Transcription repressor MYB6
SwissprotQ9SZP14e-70MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A2P5FK673e-88A0A2P5FK67_TREOI; MYB transcription factor
STRINGXP_010093406.11e-88(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-70myb domain protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]