PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK11667.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 213aa MW: 23639.9 Da PI: 8.7271

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK11667.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.5e-09	30	79	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h +Er+RR+++ + Lr+llP + ++K s ++ + +YIk+Lq PK11667.1 30 KHRDNERQRRQEMAALHASLRSLLPLeL---IKGKRSISDHINEGANYIKQLQ 79 799*********************78...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.92E-6	24	83	No hit	No description
PROSITE profile	PS50888	11.363	26	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.28E-10	29	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	30	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-7	30	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
XLTKSTTLVN HDSATVTQIF SDNKSKEMMK HRDNERQRRQ EMAALHASLR SLLPLELIKG 60 KRSISDHINE GANYIKQLQM KIKELDAKRD ALKRYNYLSN GNIIIGPSST TDNDHHGGAS 120 SSSVLCQDNL IRVQPWSGGL EIVISSTGDA SALPMSKILQ VILEEGLSVV SCISTKVNGI 180 LLHTIKAEAH CCHIELHCSD NYLSALYQKL KKM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008234327.1	4e-51	PREDICTED: transcription factor bHLH36-like isoform X2
Refseq	XP_020412653.1	3e-51	transcription factor bHLH36 isoform X2
TrEMBL	A0A2P5D9K2	6e-63	A0A2P5D9K2_PARAD; Basic helix-loop-helix transcription factor
STRING	XP_008234326.1	1e-48	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	1e-41	bHLH family protein