PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11636.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 396aa    MW: 44315.9 Da    PI: 7.2989
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11636.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07326226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               k++lC+ffa+ G C  G+ C ++H+
  PK11636.1  3 KRVLCKFFAQ-GACLKGEHCEYSHD 26
               99********.*************5 PP
2zf-CCCH23.59.7e-083453525
               --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                C f++r G C yG+rC++ H
  PK11636.1 34 VCTFYQR-GLCAYGSRCRYQH 53
               5999999.************* PP
3zf-CCCH19.51.8e-06143164426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                ++C+ fa+ G C++G++C+ +Hg
  PK11636.1 143 PICS-FAAAGDCPRGEKCPHIHG 164
                6788.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.915128IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-7326IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4462956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00323055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-53254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-43454IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-53453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671139166IPR000571Zinc finger, CCCH-type
SMARTSM003560.0068140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.21E-13198272No hitNo description
Gene3DG3DSA:3.30.40.106.9E-10201267IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001628.65E-4207267No hitNo description
SMARTSM001842.9E-7208265IPR001841Zinc finger, RING-type
PfamPF000972.8E-7208265IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.357208266IPR001841Zinc finger, RING-type
PROSITE patternPS005180232241IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.788295324IPR000571Zinc finger, CCCH-type
SMARTSM003560.017295323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSKRVLCKFF AQGACLKGEH CEYSHDWKDP PNNVCTFYQR GLCAYGSRCR YQHTKASQSQ  60
SSGSSSSTSS QKFPVSDSRS RPHSSSTSLN GVALVSGVFS ELSAASRPFV VPKQPAWNQG  120
LEQSDALHSG NVGESSLSPA DLPICSFAAA GDCPRGEKCP HIHGDLCPTC GKHCLHPYRL  180
DEKEEHLRTC EKKHKNLEAL KHSQEIECSV CLERVLSKPT AAERKFGLMS ECDHPFCISC  240
IRNWRSSSPT SGLDVNSALR ACPICRKLSY FVVPSVIWYT SKEEKQEIVD SYKAKLKSID  300
CKHFDFGNGN CPFGTSCFYR HTVKPGSYVW KHHRPPPRRR TPHRSNFVDI DAMLDEMECL  360
LDDGLDSEDD STWNMGLMFS LMGFETDSSS DEDFMF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816679.10.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1
SwissprotE0X9N41e-148C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2P5AI930.0A0A2P5AI93_PARAD; Cdk-activating kinase assembly factor
STRINGEMJ192850.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-138C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]