PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10877.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family E2F/DP
Protein Properties Length: 96aa    MW: 10728 Da    PI: 9.2206
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10877.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP39.59.2e-133595451
    E2F_TDP  4 ksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilN 51
                +Lr++++    +++k e+ g+ t+ e+a+e+++e               d+kn+rRR+YD+lN
  PK10877.2 35 GGLRQFSTI---VCKKLEAkGRATYGEIADEIIAEfggavkespvsldefDEKNIRRRVYDALN 95
               69*******...****9999*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013727.3E-43295IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-213495IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.22E-73595IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.9E-103695IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MDQSHQVSAN LPTDHTPIKK HNAEKKKRPC KIIGGGLRQF STIVCKKLEA KGRATYGEIA  60
DEIIAEFGGA VKESPVSLDE FDEKNIRRRV YDALNX
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031258.12e-31transcription factor-like protein DPA isoform X1
SwissprotQ9FNY33e-20DPA_ARATH; Transcription factor-like protein DPA
TrEMBLW9SWI61e-29W9SWI6_9ROSA; Transcription factor-like protein DPB
STRINGXP_010111484.12e-30(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.31e-22Transcription factor DP