PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK09848.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 200aa MW: 22750 Da PI: 9.7867 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.3e-06 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PK09848.1 60 FVCEICNKGFQRDQNLQLHRRGH 82 89*******************88 PP | |||||||
2 | zf-C2H2 | 17.4 | 1.3e-05 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ PK09848.1 136 WKCERCSKKYAVQSDWKAHMKTC 158 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.0E-6 | 59 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.03E-7 | 59 | 82 | No hit | No description |
SMART | SM00355 | 0.017 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 60 | 82 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 2.4E-5 | 60 | 82 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 101 | 131 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 124 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.03E-7 | 131 | 157 | No hit | No description |
SMART | SM00355 | 77 | 136 | 156 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEVSTVSAGE ASMSSPGFQT SPVPLEVVIP KKKRNLPGMP DPDAEVIALS PNTLMATNRF 60 VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTTKEIRKRV YVCPEASCVH HNPARALGDL 120 TGIKKHFCRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT REYKCDCGTL FSRRDSFITH 180 RAFCDALAEE SARSQALEIX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-37 | 132 | 197 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 1e-37 | 132 | 197 | 3 | 68 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028794491.1 | 1e-126 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like isoform X1 | ||||
Refseq | XP_028794492.1 | 1e-126 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like isoform X1 | ||||
Refseq | XP_028794493.1 | 1e-126 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like isoform X1 | ||||
Refseq | XP_028794494.1 | 1e-126 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like isoform X2 | ||||
Swissprot | Q9LVQ7 | 1e-117 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A2P5FZB7 | 1e-136 | A0A2P5FZB7_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | XP_002510356.1 | 1e-125 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-119 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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