PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08631.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 100aa    MW: 11529.7 Da    PI: 10.8999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08631.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-17854248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g WT+eEd++l+++++++G+  W + a   g++R++k+c++rw +yl
        PK08631.1  8 GFWTAEEDQKLAQVIQLHGPTKWQSLAINAGLNRSGKSCRLRWMNYL 54
                     67*******************************************97 PP
2Myb_DNA-binding41.43.3e-136099142
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42
                     rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k+
        PK08631.1 60 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKN 99
                     78999*****************.*********.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.027258IPR017930Myb domain
SuperFamilySSF466892.51E-28699IPR009057Homeodomain-like
SMARTSM007171.7E-13656IPR001005SANT/Myb domain
CDDcd001679.92E-111054No hitNo description
Gene3DG3DSA:1.10.10.604.1E-231061IPR009057Homeodomain-like
PfamPF002491.5E-161054IPR001005SANT/Myb domain
PROSITE profilePS5129414.97659100IPR017930Myb domain
SMARTSM007171.1E-459100IPR001005SANT/Myb domain
PfamPF002491.9E-116099IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2062100IPR009057Homeodomain-like
CDDcd001671.06E-76499No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
XKEGNRSGFW TAEEDQKLAQ VIQLHGPTKW QSLAINAGLN RSGKSCRLRW MNYLRPNIKR  60
GNISDQEEDL ILRLHKLLGN RWSLIAGRLP GRTDNEIKNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25899595MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-25899595C-Myb DNA-Binding Domain
1msf_C3e-25899595C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885767.14e-56transcription factor MYB114-like
SwissprotP102902e-44MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A2P5A9Q33e-55A0A2P5A9Q3_PARAD; GAMYB transcription factor
TrEMBLA0A2P5AXK43e-55A0A2P5AXK4_TREOI; GAMYB transcription factor
STRINGXP_009362719.12e-55(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.13e-44myb domain protein 41
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]