PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK08582.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bZIP

Protein Properties

Length: 499aa MW: 55676 Da PI: 6.8716

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK08582.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.6	7.1e-10	213	251	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAAr+sR+RKka++++Le L++ + PK08582.1 213 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLRLSQLEQ 251 788*************************86666655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.3E-8	206	256	No hit	No description
SMART	SM00338	2.9E-9	209	280	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.1E-6	211	255	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.404	211	255	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-6	213	256	No hit	No description
CDD	cd14708	1.20E-22	213	265	No hit	No description
PROSITE pattern	PS00036	0	216	231	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.6E-31	298	371	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
XIYNNNSKRK MQSFRAAPSN PELYTHSSFY FRGDECSRNQ TRFSDLVELE HSAAAFPHDD 60 AVDLSPSSIF SLKSNNIAVL PNNLHPHETF NPGAVCLDIA PTTTGTSCVD TGQGQVQGQG 120 QGKGQGLQQH QQVVYQHHQQ QQKRTNVVVS PLGSGHFENW GDSAMADNSQ QTDTSTDVDT 180 DERNHFQGMQ HGSLVVVDSM DDQSAKVKTG DQKTLRRLAQ NREAARKSRL RKKAYVQQLE 240 SSRLRLSQLE QELQRARQQG MFIASGFSSD HNQLMAGNGA LAFDLDYARW LDEQQRLTND 300 LRSAVNSHMG DNELRVLVDG VMAHYDEIFR LKSIGAKADV FHMLSGMWKT PAERCFMWLG 360 GFRSSEVLKI LGSHLEPLTD QQLLGICNLQ QSSQQAEDAL SQGMEALQQS LVETLSSATL 420 GPAGSGNVAD YMGQMAIAMG KLATLENFLY QADLLRQQTL QQMHRILTTR QAARALLVIN 480 DYFSRLRALS SLWLARPRE

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

XIYNNNSKRK MQSFRAAPSN PELYTHSSFY FRGDECSRNQ TRFSDLVELE HSAAAFPHDD  60
AVDLSPSSIF SLKSNNIAVL PNNLHPHETF NPGAVCLDIA PTTTGTSCVD TGQGQVQGQG  120
QGKGQGLQQH QQVVYQHHQQ QQKRTNVVVS PLGSGHFENW GDSAMADNSQ QTDTSTDVDT  180
DERNHFQGMQ HGSLVVVDSM DDQSAKVKTG DQKTLRRLAQ NREAARKSRL RKKAYVQQLE  240
SSRLRLSQLE QELQRARQQG MFIASGFSSD HNQLMAGNGA LAFDLDYARW LDEQQRLTND  300
LRSAVNSHMG DNELRVLVDG VMAHYDEIFR LKSIGAKADV FHMLSGMWKT PAERCFMWLG  360
GFRSSEVLKI LGSHLEPLTD QQLLGICNLQ QSSQQAEDAL SQGMEALQQS LVETLSSATL  420
GPAGSGNVAD YMGQMAIAMG KLATLENFLY QADLLRQQTL QQMHRILTTR QAARALLVIN  480
DYFSRLRALS SLWLARPRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015895683.1	0.0	transcription factor TGA2.3 isoform X2
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A2P5ENB3	0.0	A0A2P5ENB3_TREOI; Basic-leucine zipper transcription factor
STRING	EOY02112	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-150	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]