PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK08539.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 486aa MW: 52628.6 Da PI: 4.4308

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK08539.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.5e-11	299	344	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ L+ellP++ K +Ka++L + ++Y+k Lq PK08539.1 299 HSIAERLRREKIAERMKGLQELLPNP-----NKTDKASMLDEIIDYVKFLQ 344 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.33E-12	292	348	No hit	No description
SuperFamily	SSF47459	2.62E-16	292	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.926	294	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-15	296	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	299	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	300	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MDEYFDHLLY SSSWLDKDLE ERSSEICSES DPPKGLLFSS VEVNEDDNNN SHTTLIGSNG 60 STESLATQDA SSYVLDSESD YGLNMALLTD EAQLQDSHEN FIEHLSNGVV NGISELKTVG 120 FQYNMAIPMP NSLSLDSSKQ NPVSQHVSSS STLPYFEVGD MQSNTLEPSV LQCFDKEFKT 180 ISPIPHLCSH PSFEGVSSLS PDMGQDGIGA LGMQGEEYAI DNDLFAMESH SSNLSASKGA 240 HDLPNYPLSS FASAPQMIMT TTGLQSLSQA PSTTPAAVEC SPTAKPRPRA RRGQATDPHS 300 IAERLRREKI AERMKGLQEL LPNPNKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAGA 360 VVPLITDGQA EGGNGFLLNQ SSSAGELGEV VFPSDEIVLF ERELVKLMES SVTKAMQFLQ 420 TKGLCLMPVA LASAISTKKR NDQSSPSSVS QDYTKKNDFT NANAPMTSPT TEPEDGTKVS 480 CKARHT

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MDEYFDHLLY SSSWLDKDLE ERSSEICSES DPPKGLLFSS VEVNEDDNNN SHTTLIGSNG  60
STESLATQDA SSYVLDSESD YGLNMALLTD EAQLQDSHEN FIEHLSNGVV NGISELKTVG  120
FQYNMAIPMP NSLSLDSSKQ NPVSQHVSSS STLPYFEVGD MQSNTLEPSV LQCFDKEFKT  180
ISPIPHLCSH PSFEGVSSLS PDMGQDGIGA LGMQGEEYAI DNDLFAMESH SSNLSASKGA  240
HDLPNYPLSS FASAPQMIMT TTGLQSLSQA PSTTPAAVEC SPTAKPRPRA RRGQATDPHS  300
IAERLRREKI AERMKGLQEL LPNPNKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAGA  360
VVPLITDGQA EGGNGFLLNQ SSSAGELGEV VFPSDEIVLF ERELVKLMES SVTKAMQFLQ  420
TKGLCLMPVA LASAISTKKR NDQSSPSSVS QDYTKKNDFT NANAPMTSPT TEPEDGTKVS  480
CKARHT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107083.1	1e-147	transcription factor bHLH69
TrEMBL	A0A2P5AJZ5	0.0	A0A2P5AJZ5_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010107083.1	1e-146	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15061	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-60	LJRHL1-like 1