PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK08038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB | ||||||||
Protein Properties | Length: 115aa MW: 13512.2 Da PI: 10.2716 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++q+G +W++ ++ g+ R++k+c++rw +yl PK08038.1 15 KGPWTPEEDHILISYIQQFGHANWRALPKQAGLLRCGKSCRLRWINYL 62 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.7 | 2.7e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia ++ gRt++++k++w+++l PK08038.1 68 RGNFSKEEEDTIIKLHHNLGNR-WSSIATQLP-GRTDNEIKNFWHTHL 113 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-26 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.842 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.69E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.938 | 63 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 66 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-17 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.57E-11 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MGSRRACCEN MGLRKGPWTP EEDHILISYI QQFGHANWRA LPKQAGLLRC GKSCRLRWIN 60 YLRPDIKRGN FSKEEEDTII KLHHNLGNRW SSIATQLPGR TDNEIKNFWH THLKX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 10 | 114 | 22 | 125 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00375 | DAP | Transfer from AT3G23250 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021677204.1 | 4e-70 | transcription factor MYB4-like isoform X2 | ||||
Swissprot | Q7XBH4 | 2e-66 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | A0A2P5C0L4 | 3e-68 | A0A2P5C0L4_TREOI; MYB transcription factor | ||||
TrEMBL | A0A2P9JZL8 | 1e-68 | A0A2P9JZL8_HEVBR; Downstream cold-responsive protein MYB15-3 | ||||
STRING | XP_010102236.1 | 2e-68 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 4e-67 | myb domain protein 15 |
Publications ? help Back to Top | |||
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