PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07533.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bZIP
Protein Properties Length: 170aa    MW: 18894 Da    PI: 7.0741
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07533.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.81.2e-132886563
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
               ++ +r+ +NRe+ArrsR RK++ ++ L+  v +L +eN++    ++  ++++ +++se+
  PK07533.1 28 RKRKRMLSNRESARRSRMRKQKHLDDLTAQVSQLRKENHQIMTSVNITTQHYLNVESEN 86
               67899*************************************99999999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.7E-111772No hitNo description
SMARTSM003383.8E-192488IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.682689IPR004827Basic-leucine zipper domain
PfamPF001708.6E-112885IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-132880No hitNo description
CDDcd147023.19E-202979No hitNo description
PROSITE patternPS0003603146IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MASSSGTSSG SFQNSGSEED LQALMDQRKR KRMLSNRESA RRSRMRKQKH LDDLTAQVSQ  60
LRKENHQIMT SVNITTQHYL NVESENSILR AQMSELTHRL QSLDEIINFL NATNNAVVLG  120
GGSGSNGGDH FMTGGTCFGT VEPMESFLNP LNFSTMNQPI MASADVFNQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12748RKRKRMLSNRESARRSRMRKQK
24047RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027252.13e-74bZIP transcription factor 44
SwissprotC0Z2L57e-52BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A2P5CVQ43e-74A0A2P5CVQ4_PARAD; Basic-leucine zipper transcription factor
STRINGXP_010105351.11e-73(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.13e-49G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]