PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK07450.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HRT-like

Protein Properties

Length: 401aa MW: 44872 Da PI: 10.2023

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK07450.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	53.4	4.2e-17	273	303	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l++ s+C+r+Pv+gRKRC+ HKGmR+ PK07450.1 273 ICGVVLGHDSICRRPPVEGRKRCADHKGMRV 303 8*****************************7 PP
2	HRT-like	55.8	7.7e-18	352	381	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CG+il dGs+Ck qP+kg+KRC eHKG+Ri PK07450.1 352 CGFILADGSPCKSQPIKGNKRCIEHKGRRI 381 *****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MVAGDPGVVV SRLKREDCKH TKHDRHFSRW EILVGPSDWE DHSLGKEGAE RYRVHNLPKN 60 SGPGVYELGI AVSRTGFGRE IGKLIPERIV VVYLGQADSV RTRLQRYGRS GAHLGNSYSS 120 GFSIDSKEAL QKGPGLFEEI LLSGYPIVFR WAPMPSKSDA IRIETQLLNT FDYAWNTSIN 180 GSRRPNDILQ KLKKISSSTT HFYDSVLKLV PFSQKQVGIR IEARKSPSTE GKFNPRVDEE 240 SHNFLSRVFK FGRSQPKLVL DRSTIPPDDR TTICGVVLGH DSICRRPPVE GRKRCADHKG 300 MRVKGTVKVE ISNGNVYPQF DRAAPYSSNE DSKGVSQVTV NYLTSETFTP ACGFILADGS 360 PCKSQPIKGN KRCIEHKGRR IRKPNSVQNE KIDHLLQSVV S

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MVAGDPGVVV SRLKREDCKH TKHDRHFSRW EILVGPSDWE DHSLGKEGAE RYRVHNLPKN  60
SGPGVYELGI AVSRTGFGRE IGKLIPERIV VVYLGQADSV RTRLQRYGRS GAHLGNSYSS  120
GFSIDSKEAL QKGPGLFEEI LLSGYPIVFR WAPMPSKSDA IRIETQLLNT FDYAWNTSIN  180
GSRRPNDILQ KLKKISSSTT HFYDSVLKLV PFSQKQVGIR IEARKSPSTE GKFNPRVDEE  240
SHNFLSRVFK FGRSQPKLVL DRSTIPPDDR TTICGVVLGH DSICRRPPVE GRKRCADHKG  300
MRVKGTVKVE ISNGNVYPQF DRAAPYSSNE DSKGVSQVTV NYLTSETFTP ACGFILADGS  360
PCKSQPIKGN KRCIEHKGRR IRKPNSVQNE KIDHLLQSVV S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024017156.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2 isoform X1
TrEMBL	W9R5X1	0.0	W9R5X1_9ROSA; Uncharacterized protein
STRING	XP_010090025.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-87	effector of transcription2