PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK06964.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 192aa MW: 21391.2 Da PI: 10.0523 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 234 | 3.5e-72 | 2 | 161 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsene 105 +se+vCyvqCn CntilavsvP +slf++vtvrCGhC++llsvn+ +++ ++a ++h + + ++++ + +++++ s +k++++++ + + ++ PK06964.1 2 ASERVCYVQCNLCNTILAVSVPCSSLFTIVTVRCGHCANLLSVNMGTSMPTMAPQDHPQSQNNKQIIVSSEGSGKEYGSSSSKSNKNKHATVE---PVKH 98 69*******************************************************999999998888887888887777666655444433...4555 PP YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 d+ + +pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl PK06964.1 99 DQPIR-TPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 161 55554.556.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.3E-74 | 2 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.57E-8 | 103 | 154 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.1E-5 | 109 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MASERVCYVQ CNLCNTILAV SVPCSSLFTI VTVRCGHCAN LLSVNMGTSM PTMAPQDHPQ 60 SQNNKQIIVS SEGSGKEYGS SSSKSNKNKH ATVEPVKHDQ PIRTPPIRPP EKRQRVPSAY 120 NRFIKEEIQR IKASNPDISH REAFSTAAKN WAHFPHIHFG LKLDGTNNKQ AKLDKTIARD 180 HHQGTQKTNG FY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010090516.1 | 2e-96 | axial regulator YABBY 5 isoform X4 | ||||
Swissprot | Q9XFB0 | 1e-73 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | W9QKW0 | 5e-95 | W9QKW0_9ROSA; Uncharacterized protein | ||||
STRING | XP_010090516.1 | 9e-96 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-72 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|