PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK06696.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 310aa MW: 34426.8 Da PI: 7.2594

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK06696.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.3e-09	38	87	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRd++N+ f eL l ++ +K++K +iL+ ++ +k+L PK06696.1 38 RKVQKADREKLRRDKLNEYFLELGNTLDSD----RPKNDKGTILTDSIQMLKDL 87 5677889********************8....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.373	37	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-12	37	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-13	37	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	38	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.01E-6	38	91	No hit	No description
SMART	SM00353	1.1E-6	43	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEQWKPEDYS PHSAPSSSHD HSRQKQKADV DVDPVTARKV QKADREKLRR DKLNEYFLEL 60 GNTLDSDRPK NDKGTILTDS IQMLKDLTAE VNKLKAEYAS LSEESRELTM EKNELREEKA 120 SLKSDIENLN IQYQQRVRVM FPWGAIDPSV VMGPTYSYPM PVPVPQGPIP FHPSSQPFSF 180 FGAQNPGAVP NFVQYPTPVH PPIEQPTSQN ASTSHISSKQ DSRSKSSDQR RGSNAERASD 240 GSTDVATDLE LKMPGSSTQQ DSSSGVSKKS KQSQRKERTT TNGSSTSRFS SQAHQDSSSN 300 SVGDIPKSNN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008336910.1	1e-149	transcription factor bHLH121-like isoform X2
Swissprot	Q9LT23	2e-73	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A498KGZ8	1e-150	A0A498KGZ8_MALDO; Uncharacterized protein
STRING	XP_008336910.1	1e-149	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	2e-59	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]