PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06612.4
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 440aa    MW: 51159.6 Da    PI: 9.6723
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06612.4genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.91.9e-07233264337
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                      +WT+eE e  ++ +k++G + Wk+ ++ ++k   +
        PK06612.4 233 KWTPEEYECVLNFHKEHGAD-WKKLSKQLNK--HR 264
                      7*******************.********94..34 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-4157228IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-7160247IPR009057Homeodomain-like
SMARTSM007171.9230277IPR001005SANT/Myb domain
PROSITE profilePS500905.854233275IPR017877Myb-like domain
SuperFamilySSF466893.81E-7233292IPR009057Homeodomain-like
PfamPF139213.8E-9234292No hitNo description
Gene3DG3DSA:1.10.10.603.7E-6248285IPR009057Homeodomain-like
PROSITE profilePS500906.62276344IPR017877Myb-like domain
SMARTSM007174.2280346IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-5286345IPR009057Homeodomain-like
SuperFamilySSF466892.68E-5324407IPR009057Homeodomain-like
PROSITE profilePS500907.294346399IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
XRKKKRKREK DDGDNAVKNS ETDVQNLPKK KRKRENVPIE EALADNLGTE DKLDEVVRAS  60
DEGKKKVKST KRGEGDSKED DSKKDKKKKA KARKQVSDGK GNKQKVRTKK DSKTTETSEN  120
HSPQGKSKRV TFSDHVEVFS PSDSPSVQSK QVGGLVQGKR FTPEEDELVK AAVLAYIEER  180
GLGDAGLDMV LNCKSHREVK NCWKTIALAL PWRPRYSVYY RAHMIFERSD IHKWTPEEYE  240
CVLNFHKEHG ADWKKLSKQL NKHRLHVKDT FRRIKFTGVN KGRWSQDEYS KLFDLVNMDL  300
RLRASEQKRV KHGMLRDNIC WEIISKKLST RHHVGCCSKW YKQLTSPMVV EGLWDDTDDH  360
RLVDSLSDLD AACIEDVDWD NLLEHRTGDI CRKRWHQMVK HIGDHVNKPF SEQVEVLSKR  420
YSFDVLEARE EYNSKEPVDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
117RKKKRKR
218RKKKRKRE
319RKKKRKREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109475.11e-155RNA polymerase I termination factor
RefseqXP_018856837.11e-157PREDICTED: DNA-binding protein REB1
RefseqXP_018856838.11e-157PREDICTED: DNA-binding protein REB1
TrEMBLA0A2P5FTT30.0A0A2P5FTT3_TREOI; Octamer-binding transcription factor
STRINGXP_010109475.11e-155(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-119MYB_related family protein