PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06612.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 653aa    MW: 75175.3 Da    PI: 8.1784
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06612.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33e-07446477337
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                      +WT+eE e  ++ +k++G + Wk+ ++ ++k+  +
        PK06612.1 446 KWTPEEYECVLNFHKEHGAD-WKKLSKQLNKH--R 477
                      7*******************.********943..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-4370441IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-6373460IPR009057Homeodomain-like
SuperFamilySSF466893.51E-7419497IPR009057Homeodomain-like
SMARTSM007171.9443490IPR001005SANT/Myb domain
PROSITE profilePS500905.854446488IPR017877Myb-like domain
PfamPF139216.7E-9447505No hitNo description
Gene3DG3DSA:1.10.10.606.3E-6461498IPR009057Homeodomain-like
PROSITE profilePS500906.62489557IPR017877Myb-like domain
SMARTSM007174.2493559IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-5499558IPR009057Homeodomain-like
SuperFamilySSF466894.3E-5537620IPR009057Homeodomain-like
PROSITE profilePS500907.294559612IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MGEKKKHKSE KHKEKTNGHE KDDKEFPEDE EDTKKITDEV AETIKTTCLE GEDSTNEKAI  60
EQKELKEKKK KHKKDKKKKE GIAGISSSGE NCEDDEMDGH ELNKNFQDTS AVSSQVQQVE  120
KEKKKKKKKE GVDGISSSRE NVEDEVVKVQ ECNVVNDEMD CAEKKKNKKD RADGISSSGE  180
NAANCEMEEL VKGQGYNKNC QDTSVVDMNV EHAERKKKRK REKDDGDNAV KNSETDVQNL  240
PKKKRKRENV PIEEALADNL GTEDKLDEVV RASDEGKKKV KSTKRGEGDS KEDDSKKDKK  300
KKAKARKQVS DGKGNKQKVR TKKDSKTTET SENHSPQGKS KRVTFSDHVE VFSPSDSPSV  360
QSKQVGGLVQ GKRFTPEEDE LVKAAVLAYI EERGLGDAGL DMVLNCKSHR EVKNCWKTIA  420
LALPWRPRYS VYYRAHMIFE RSDIHKWTPE EYECVLNFHK EHGADWKKLS KQLNKHRLHV  480
KDTFRRIKFT GVNKGRWSQD EYSKLFDLVN MDLRLRASEQ KRVKHGMLRD NICWEIISKK  540
LSTRHHVGCC SKWYKQLTSP MVVEGLWDDT DDHRLVDSLS DLDAACIEDV DWDNLLEHRT  600
GDICRKRWHQ MVKHIGDHVN KPFSEQVEVL SKRYSFDVLE AREEYNSKEP VDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214220RKKKRKR
2214221RKKKRKRE
3214222RKKKRKREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109475.11e-155RNA polymerase I termination factor
RefseqXP_018856837.11e-156PREDICTED: DNA-binding protein REB1
RefseqXP_018856838.11e-156PREDICTED: DNA-binding protein REB1
TrEMBLA0A2P5FTT30.0A0A2P5FTT3_TREOI; Octamer-binding transcription factor
STRINGXP_010109475.11e-155(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-118MYB_related family protein