PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK06605.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | Trihelix | ||||||||
Protein Properties | Length: 261aa MW: 29798.7 Da PI: 4.4616 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.6 | 3.9e-19 | 23 | 110 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+ e+ +Li+a++e++ +l+rg lk +Weev+ + + +++++qC++k+e+l++ry+ +k++ + +s +pyfd ++ PK06605.1 23 WTHPETVHLIQAYEEKWYSLKRGPLKSSQWEEVAVTVaarcgyDYTEPSKTAIQCRHKMEKLRQRYRSEKNRVNLV---GVSVWPYFDLMD 110 ***********************************998666665566689***********************995...5668*****998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.051 | 22 | 85 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.2E-19 | 22 | 112 | No hit | No description |
SMART | SM00595 | 7.1E-8 | 30 | 117 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MATATTTTPP PPTPGKKPQP IPWTHPETVH LIQAYEEKWY SLKRGPLKSS QWEEVAVTVA 60 ARCGYDYTEP SKTAIQCRHK MEKLRQRYRS EKNRVNLVGV SVWPYFDLMD RLERGPLPIS 120 AQPMIAIPYR RDRDLDDEDE DDDDDEESVI RTKSRSIDYI LKRPAIVNRF AGDGERERGS 180 VNGFSRVWGE PVTKRPREPV VEEEDDDDDS DGDEAEGRDF GTAAEEERGG TEIGGGDKGI 240 FGKNCWDGEY ENGDDERYRE V |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015892407.1 | 1e-73 | trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A2P5CIE1 | 9e-82 | A0A2P5CIE1_TREOI; Myb-like domain containing protein | ||||
STRING | VIT_07s0005g06670.t01 | 4e-66 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10087 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 2e-39 | Trihelix family protein |