PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK04169.3

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

TCP

Protein Properties

Length: 372aa MW: 38037 Da PI: 9.1478

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK04169.3	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.6	1.8e-41	96	197	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ PK04169.3 96 APVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNISLRSSGSTLSAPhsksaphsfhsa 195 7789*****************************************************************9997777777777744444222223333333 PP TCP 89 .k 89 + PK04169.3 196 lA 197 30 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.0E-40	101	224	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	102	156	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
XSSSSHHQFV VPFDGRSSSN SPFMGSISIQ AGLSHSHGHT NSSTTTTTTT TTSSLSTSSS 60 SSSSTTTTVD ASLAIATRSE SLPLKNQLVV APAAPAPVKR STKDRHTKVD GRGRRIRMPA 120 TCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIAATGTG TIPANFSSLN ISLRSSGSTL 180 SAPHSKSAPH SFHSALALAA HHYDDGGGFA HSGLMGFHHH QQQHHHQQPS PPVPLMTADQ 240 IAEALPGGGD SGGGGGGDSS ENYMRKRFRE DLFKENSDST TNQGGGGGGG SPSSNSNKSF 300 KSGDGGGGGD SGGGLQLPKQ QQNQDGSGSS GLLRPSNILP ATAMWAVAPA QASGAGSTFW 360 MLPVSAGAGV SX

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

XSSSSHHQFV VPFDGRSSSN SPFMGSISIQ AGLSHSHGHT NSSTTTTTTT TTSSLSTSSS  60
SSSSTTTTVD ASLAIATRSE SLPLKNQLVV APAAPAPVKR STKDRHTKVD GRGRRIRMPA  120
TCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIAATGTG TIPANFSSLN ISLRSSGSTL  180
SAPHSKSAPH SFHSALALAA HHYDDGGGFA HSGLMGFHHH QQQHHHQQPS PPVPLMTADQ  240
IAEALPGGGD SGGGGGGDSS ENYMRKRFRE DLFKENSDST TNQGGGGGGG SPSSNSNKSF  300
KSGDGGGGGD SGGGLQLPKQ QQNQDGSGSS GLLRPSNILP ATAMWAVAPA QASGAGSTFW  360
MLPVSAGAGV SX

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018835543.1	1e-126	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	7e-69	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A2P5BJ32	1e-134	A0A2P5BJ32_PARAD; TCP transcription factor
STRING	EOX97160	1e-121	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-52	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]