PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03585.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 652aa    MW: 73917.7 Da    PI: 9.0351
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03585.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-08465506240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W  eE ell ++v+++++g   +W+ I+ ++g+gRt +++
        PK03585.1 465 KPWGREEIELLRKGVQKFPKGtsrRWEVISDYIGTGRTVEEI 506
                      68************************************9886 PP
2Myb_DNA-binding29.22.2e-09595639345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
        PK03585.1 595 VWSAVQERALVQALKTFPKDvnqRWERVAASVP-GKTVNQCKKKFS 639
                      6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1108.6E-2291196IPR001623DnaJ domain
SuperFamilySSF465654.71E-2093201IPR001623DnaJ domain
SMARTSM002711.5E-1394169IPR001623DnaJ domain
PROSITE profilePS5007618.74595177IPR001623DnaJ domain
PfamPF002261.5E-1895174IPR001623DnaJ domain
CDDcd062574.24E-1395166IPR001623DnaJ domain
PRINTSPR006255.3E-10100118IPR001623DnaJ domain
PRINTSPR006255.3E-10118133IPR001623DnaJ domain
PRINTSPR006255.3E-10149169IPR001623DnaJ domain
PROSITE patternPS006360154173IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.602.8E-5459507IPR009057Homeodomain-like
SuperFamilySSF466892.24E-7461507IPR009057Homeodomain-like
PROSITE profilePS512936.797462517IPR017884SANT domain
SMARTSM007171.8E-6463516IPR001005SANT/Myb domain
PfamPF002499.7E-7465506IPR001005SANT/Myb domain
CDDcd001676.96E-5466506No hitNo description
PROSITE profilePS5129310.807591646IPR017884SANT domain
SMARTSM007178.1E-9592644IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-5593639IPR009057Homeodomain-like
SuperFamilySSF466891.12E-8594646IPR009057Homeodomain-like
PfamPF002497.3E-8595638IPR001005SANT/Myb domain
CDDcd001676.11E-7596642No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MEVRSSVRRI TYSQELVDGK SIQVSSNCLP IQASKYDPAG HAFHQAALKL RGHVEKVVDD  60
GDKKVADEKE QTSLPSDSYS SKGKKKSGAD DSQQDHYALL GLANLRYLAT EDQIKKSYRE  120
TALKYHPDKQ AALLLAEETE AAKQAKKDEI ESHFKSIQEA YEILIDPVKR RIYDSTDEFD  180
DEIPTDCAPQ DFFKVFGPAF MRNGRWSVNQ PIPSFGDDKT PIGEVDNFYN FWYSFKSWRE  240
FPHSDEFDLE QAESRDHKRW MERQNAKLSE KARKEEITRI RTLVDNAYKR DPRIQRRKEE  300
EKAEKQRKKE AKYLAKKLQE EEAVRAAEEE KRRKEEEDKR AAEAALQQRK VKEKEKKLLR  360
KERARLRTLS ASVVTQKSFG ISADDVESLC TSLNTEQLRN LCDKMGGKGE LEIGNILRDA  420
LGYSSNLEET RKEDQKKAES QNGSVDTNGA TPATIPFSSS EKKEKPWGRE EIELLRKGVQ  480
KFPKGTSRRW EVISDYIGTG RTVEEILKAT KTVLLQKPDS AKAFDSFLEK RKPAPSIASP  540
LSTREEAGVS IPQATENGAA QTETPQELPN GGANTQSPND SSSVNGVTSS SEQDVWSAVQ  600
ERALVQALKT FPKDVNQRWE RVAASVPGKT VNQCKKKFSV MKESFRSKKT TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-1819129520124Zuotin
5dje_B4e-1819129520124Zuotin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A2P5CY230.0A0A2P5CY23_TREOI; Octamer-binding transcription factor
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain