PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03582.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family FAR1
Protein Properties Length: 671aa    MW: 77248.6 Da    PI: 5.3906
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03582.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.73.5e-2260142290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+++++eleHnH ++
  PK03582.1  60 FYNCYAKDQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSDAN-----RPRPETRTGCPAMIKFRLMDTKRWRIIEVELEHNHLIS 142
                9***************99997.66779***************9988.....***********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1960142IPR004330FAR1 DNA binding domain
PfamPF105511.3E-27263356IPR018289MULE transposase domain
PROSITE profilePS509669.235548584IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-4559586IPR006564Zinc finger, PMZ-type
PfamPF044347.1E-5561581IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MEEVSLNTEP VGDDDGDELE TEADCAMTEY VSQGGILQGG NPLPPSVGME FDSYDDVYYF  60
YNCYAKDQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SDANRPRPET RTGCPAMIKF  120
RLMDTKRWRI IEVELEHNHL ISPASGKFYK SHKNIGVGTK RALQLDGPDE TQKVKLFRTV  180
IVDAEVNGNT EVEEEESGRS IDYSNQLKLE AGDSQAVQNF FSRSQLVDPH FFYVVDLNEK  240
GCLRNLFWAN ARTRVTYNYF GDVVCIDTTC LTDKYEVPLV SFVGVNHHGQ SVLLGCGLLA  300
GETIESYTWL FRAWLTCMSG RPPQVIISDQ NDTLQTVVAD VFPRATQCLC LSRIMQMVPE  360
KLGSLFEYNA INAALNKAVY YSQKPEEFEA AWEDMVQRHG IRDQKWLQSL YEDRKRWVPV  420
FLKDVFLAGM FPLQPNEVVL SFFEEYLNRN TPIKEFLDKY DLALQKHYQL ESLADLDSKN  480
PNSKTRCYFE LQLSRLYTNN ILRRFEREVE GMYSCFCSKQ SNSDGPIMTY IVKEQTEVNG  540
NVREARDYEV LFNPPEMEVI CVCGMFNLRG YLCRHALSVL SQNGMEEIPA QYILSRWRKD  600
LKRKYVVSNI SFSSDIGIDV NNPVHRYDHL YKCIVQVVDE GRKSQDLYKV SVQALEEILN  660
KLRLAEQDHL V
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097195.20.0uncharacterized protein LOC21408426
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLW9RSB40.0W9RSB4_9ROSA; Protein FAR1-RELATED SEQUENCE 6
STRINGXP_010097197.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]