PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03019.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family SRS
Protein Properties Length: 374aa    MW: 40400 Da    PI: 7.7991
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03019.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.71.8e-691362953154
     DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaeskkel 100
                +g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a++ +++ ++    ++skr+r+++ ++++ + +t++++++++  +
  PK03019.1 136 AGGMNCQDCGNQAKKDCIHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQLTALQLQQQDQQfrVLDNSKRHRDNQGASAALIPCTNTTTTTTRLPS 235
                6899****************************************************99988888777778889999885554444444444444444333 PP

     DUF702 101 etss......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                +ts       +P+ev+s+avfrcv+vs++dd +e++aYqtav+igGhvfkGiLyd+G+e+
  PK03019.1 236 TTSGlelggaFPAEVNSSAVFRCVKVSGMDDVDENYAYQTAVNIGGHVFKGILYDHGPEA 295
                3333455666***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.1E-66138294IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.8E-27140182IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.5E-25245293IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAGFFCLGGP RDHHHHPHQQ SSTPSSKQED QQDQVERERN LFLYRSATDS EICTNNNKQQ  60
GGGSFEIWPH HHQHQQPQNF NNYVLSFGSS PSRANNNNSS SSTRNLNDVV SGDDPTRLGF  120
TVMRPGGIVG GGSGSAGGMN CQDCGNQAKK DCIHLRCRTC CKSRGFHCQT HVKSTWVPAA  180
KRRERQQQLT ALQLQQQDQQ FRVLDNSKRH RDNQGASAAL IPCTNTTTTT TRLPSTTSGL  240
ELGGAFPAEV NSSAVFRCVK VSGMDDVDEN YAYQTAVNIG GHVFKGILYD HGPEAHYTGG  300
GDGSSGRGGG NGEDNTTHPH HQHLHLITAG TASVSAASTA GGNPSISLLD PSMYPTPLNA  360
FMAGTQFFPP PRSX
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895582e-35AC189558.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006P24, complete sequence.
GenBankGU2052682e-35GU205268.1 Brassica rapa subsp. pekinensis short internode related sequence 7 (SRS7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105273.11e-122protein SHI RELATED SEQUENCE 5
TrEMBLA0A2P5EZM81e-139A0A2P5EZM8_TREOI; Protein SHI RELATED SEQUENCE
STRINGXP_010105273.11e-121(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.13e-61SHI-related sequence 5