PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK02998.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 197aa MW: 21988.1 Da PI: 10.5005 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.1e-21 | 46 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr ++ +gr++AeIrd ++ ++r +lg+f+taeeAa+a++ a+++l+g PK02998.1 46 SHFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDDAARSLRG 96 78********.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.54E-21 | 46 | 103 | No hit | No description |
Pfam | PF00847 | 3.3E-13 | 46 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 46 | 104 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-35 | 47 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 47 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.234 | 47 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence Send to blast |
MAVDTLRLRN NSLNDGSPPH PRSIAPSPIS PPESQHFRVP PPMKESHFRG VRKRPWGRFA 60 AEIRDPWKKT RKWLGTFDTA EEAARAYDDA ARSLRGPKAK TNFGNGSISG GPVVVAASPN 120 QSVVVGECMQ LWRQPVYFHG VSPASAPARS EYKGYKLENV DVVVNEQENK NKKMMIGKEK 180 KPFLFDLNLP APLFELP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-19 | 44 | 103 | 2 | 62 | ATERF1 |
3gcc_A | 5e-19 | 44 | 103 | 2 | 62 | ATERF1 |
5wx9_A | 6e-19 | 48 | 103 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023747.1 | 8e-73 | ethylene-responsive transcription factor 8 | ||||
TrEMBL | A0A2P5AN56 | 4e-77 | A0A2P5AN56_PARAD; AP2/ERF transcription factor | ||||
STRING | XP_008235314.1 | 3e-67 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53170.1 | 3e-22 | ethylene response factor 8 |