PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK02305.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB | ||||||||
Protein Properties | Length: 203aa MW: 22903 Da PI: 10.2071 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++q G+g +W + ++++g++R++k+c++rw++yl PK02305.1 14 KGPWSPEEDATLKAYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.9 | 4e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ PK02305.1 69 GGFSEEEDNIICSLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.563 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.01E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.85E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.947 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.34E-7 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDATLKAYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPHIKHGG FSEEEDNIIC SLYLSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEHAAAAA ANQAARRANN NNLMMMMNKP EIKREATNPS TTTTTITFDH HHQNNILLPT 180 TGGLMMSGNH NHQTLPYWPE LPX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-24 | 11 | 117 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143035.1 | 5e-91 | PREDICTED: transcription factor RAX3-like | ||||
Refseq | XP_010099411.1 | 5e-91 | transcription factor RAX3 | ||||
Swissprot | Q9M2Y9 | 1e-83 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A2P5A799 | 2e-99 | A0A2P5A799_PARAD; MYB transcription factor | ||||
STRING | XP_004159573.1 | 1e-90 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 5e-80 | myb domain protein 84 |
Publications ? help Back to Top | |||
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