PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01802.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 197aa    MW: 22579.3 Da    PI: 9.9617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01802.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-101241641055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+RR+riN+++  L+ ++P+      +K++ +++Le+Av+Y+k Lq
  PK01802.1 124 RKRRERINERLRILQNIVPNG-----TKVDISTMLEEAVQYVKFLQ 164
                9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-14113180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.939114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12118175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-11120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-9123168No hitNo description
PfamPF000105.1E-8124164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
SHYNNKKNNS MMKRPRSNNS ENNVKVEKRC NNNKKKQKLM STKLNNVIKE EEEGNNNNNI  60
NGQSCSSYCS SGDDSIDNNG YGSQDQMMIM SPKENNSSSS TFDSQGKTRA RRGSATDPQS  120
LYARKRRERI NERLRILQNI VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDDMWMYAP  180
IAYNGMDIRL DHLRLAI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111674.12e-60transcription factor bHLH84
SwissprotQ7XHI92e-54BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A2P5EYD62e-59A0A2P5EYD6_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010111674.17e-60(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-43bHLH family protein