PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01325.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 347aa    MW: 37718.3 Da    PI: 6.8961
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01325.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA542.3e-17246279134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  PK01325.1 246 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 279
                99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.4E-762331IPR016679Transcription factor, GATA, plant
SMARTSM004013.5E-16240290IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.503240276IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15244303No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14244278IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.29E-14245294No hitNo description
PfamPF003205.3E-15246279IPR000679Zinc finger, GATA-type
PROSITE patternPS003440246271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MIGPNFMDEI DCGSFFDHID DLLDFPSDDV DAGLGPSTDN KSFPSIWSTQ SNSLPGSDSV  60
FSGNSASDLS AELSVPYEDI VQLEWLSTFV EDSFSGGSLT MNKEDSSTLN KDSSRQQFQT  120
SSPVSVLESS SSCCGDKSGP RSPEATTPGG RRGRARSKRP RPATFNPRPA IQLISPTSSV  180
IDTPQPFVGL KSSSDSENFA ESRPMIKIPR QIPVDQKKKK KIRLTFPAPP TEMNQNPTLQ  240
AAVRKCMHCE ITKTPQWRAG PMGPKTLCNA CGVRYKSGRL YPEYRPAASP TFIPSLHSNS  300
HKKVLEMRNK GGELIAVSGT ANAMTLNEAT TPELIPNTNS SISLDYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157161KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092608.11e-177GATA transcription factor 8
TrEMBLA0A2P5D3U40.0A0A2P5D3U4_TREOI; GATA transcription factor
STRINGXP_010092608.11e-177(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.28e-43GATA family protein