PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK01239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | EIL | ||||||||
Protein Properties | Length: 614aa MW: 69821.7 Da PI: 5.4624 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 525.3 | 2.4e-160 | 41 | 421 | 1 | 354 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekve 100 +el++rmw+d+mll+rlke++k k+ ++++k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+LraWWkekv+ PK01239.1 41 DELERRMWRDRMLLRRLKEQNKG----KQG-VDNAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLRAWWKEKVR 135 79********************8....566.8999***************************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG CS EIN3 101 fdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphd 200 fdrngpaai+ yqa++ i++++++++t s++h+l+elqDTtlgSLLsalmqhcdppqrrfplekg++pPWWPtG+e+ww++lg++kdqg+ppykkphd PK01239.1 136 FDRNGPAAIARYQAEHSIPGQNEDCST-MASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGIAPPWWPTGSEEWWPQLGMPKDQGPPPYKKPHD 234 *************************88.99********************************************************************** PP --HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XXXXXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXX CS EIN3 201 lkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ssslrkqspkvtlsceqkedve.gkkeskikhvqa 297 lkkawkvsvLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee+++++++++ ++ + +++ ++++s+ +++dv+ +++e++ +v++ PK01239.1 235 LKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARKLYPDkcPPMSATGNGSLVISETSDYDVDgVDDEPN-FEVEE 333 ***************************************************************87667788****************5566666.88999 PP XXXXX................................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS EIN3 298 vktta................................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354 +k ++ + ++v+krk+ +e+++++++++ tc+ sq+++++++l+f d++s++++++ PK01239.1 334 CKPRDigrfnigtivpsrdrilmpqvasrikgeiietNPDFVQKRKQVGDEPQMMMDQKI-FTCEYSQCPYHDYRLGFLDRTSRNNHQM 421 99999*****************************************99999999999976.**************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 2.4E-130 | 41 | 288 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 7.3E-76 | 161 | 298 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 7.45E-62 | 167 | 291 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 614 aa Download sequence Send to blast |
MGFSGNFEFV SAPPREADEA LEHETEPVGE EDYSDEEMDV DELERRMWRD RMLLRRLKEQ 60 NKGKQGVDNA KQRQSQEQAR RKKMSRAQDG ILKYMLKMME VCKAQGFVYG IIPEKGKPVT 120 GASDNLRAWW KEKVRFDRNG PAAIARYQAE HSIPGQNEDC STMASTPHTL QELQDTTLGS 180 LLSALMQHCD PPQRRFPLEK GIAPPWWPTG SEEWWPQLGM PKDQGPPPYK KPHDLKKAWK 240 VSVLTAVIKH MSPDIAKIRK LVRQSKCLQD KMTAKESATW LAIINQEEAL ARKLYPDKCP 300 PMSATGNGSL VISETSDYDV DGVDDEPNFE VEECKPRDIG RFNIGTIVPS RDRILMPQVA 360 SRIKGEIIET NPDFVQKRKQ VGDEPQMMMD QKIFTCEYSQ CPYHDYRLGF LDRTSRNNHQ 420 MNCAYRPNSS QASQQTFGMP SFQINNDKPA VFSLPFSQPK PPLAPQQINQ SSPFTGLDIP 480 EDGQKMISDL MSLYDTNAQQ RNKGLNPGNH SVPTNMENHT QPQQKYQFQM DDSFFSQGVM 540 GGNMSEQANN ISSQQVVFPS AEVQFDQCKA FDSPFDNNPN DNIADLRFSS PFNMAPVEFA 600 VDSLPKQDVS LWYL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 4e-83 | 165 | 297 | 1 | 133 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 4e-83 | 165 | 297 | 1 | 133 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00367 | DAP | Transfer from AT3G20770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010106128.2 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A2P5EMJ2 | 0.0 | A0A2P5EMJ2_TREOI; Ethylene-insensitive protein | ||||
STRING | XP_010106128.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF322 | 34 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20770.1 | 0.0 | EIL family protein |