PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01153.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 263aa    MW: 28844.5 Da    PI: 9.1134
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01153.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-17853147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ede l+++v+q+G+++W+ I+  +  gR++k+c++rw + 
        PK01153.1  8 KGSWSPQEDETLKKLVEQHGPRNWSVISTGII-GRSGKSCRLRWCNQ 53
                     799*****************************.***********985 PP
2Myb_DNA-binding57.92.2e-1862104347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd  +++a++ +G++ W+tIar ++ gRt++ +k++w++ 
        PK01153.1  62 PFTPEEDSMIIQAHAAHGNK-WATIARLLP-GRTDNAIKNHWNST 104
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.821154IPR017930Myb domain
SuperFamilySSF466898.61E-316101IPR009057Homeodomain-like
SMARTSM007174.3E-13756IPR001005SANT/Myb domain
PfamPF002494.7E-17853IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-23961IPR009057Homeodomain-like
CDDcd001672.12E-131052No hitNo description
PROSITE profilePS5129424.83455109IPR017930Myb domain
SMARTSM007176.5E-1659107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-2462107IPR009057Homeodomain-like
CDDcd001671.00E-1262105No hitNo description
PfamPF002491.1E-1562104IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MKGGDRIKGS WSPQEDETLK KLVEQHGPRN WSVISTGIIG RSGKSCRLRW CNQLCPSVQH  60
RPFTPEEDSM IIQAHAAHGN KWATIARLLP GRTDNAIKNH WNSTLRRGRR AGDKFSSSSF  120
TSDSDSVFPK ALSVGGSESS ESEPEPAMKR QCLLRSSPLE SNNVINSEGV GGIVTSLTLS  180
PPGESSVSAT EVKLNNVVLK REEESLMFAA SGGHRERCTA KIGETCWITD IQRMISKEVK  240
NYIDTLRAQD GLAIGLQASV EKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-3871073103MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-3871073103C-Myb DNA-Binding Domain
1msf_C3e-3871073103C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866980.11e-110transcription factor MYB77-like
TrEMBLA0A498KMP33e-91A0A498KMP3_MALDO; Uncharacterized protein
STRINGXP_008374172.19e-89(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.14e-54myb domain protein 77