PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01088.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 262aa    MW: 30146.2 Da    PI: 10.1422
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01088.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-154793248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + W +eEd++l+++v+ +G g+W t+++  g++R +k+c++rw +yl
        PK01088.1 47 NLWKPEEDLILKNYVETHGEGNWQTVSKLTGLKRGGKSCRLRWKNYL 93
                     56*****************************99************97 PP
2Myb_DNA-binding52.88.9e-1799144148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
        PK01088.1  99 RGGMSQEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 144
                      6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3994193IPR017930Myb domain
SMARTSM007173.9E-134595IPR001005SANT/Myb domain
SuperFamilySSF466893.91E-2845140IPR009057Homeodomain-like
PfamPF002496.3E-144793IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2148100IPR009057Homeodomain-like
CDDcd001673.74E-104993No hitNo description
PROSITE profilePS5129425.2894148IPR017930Myb domain
SMARTSM007172.4E-1698146IPR001005SANT/Myb domain
PfamPF002495.3E-1599144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-23101147IPR009057Homeodomain-like
CDDcd001673.60E-12102144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
ITGLVTGADF NYNHIPFSNQ LRKKVKELES AFMMENKRVK KQLPKKNLWK PEEDLILKNY  60
VETHGEGNWQ TVSKLTGLKR GGKSCRLRWK NYLRPNIKRG GMSQEEEDLI IRMHKLLGNR  120
WSLIAGRLPG RTDNEVKNYW NTHLNKKTSA VGKRKRVNNN SDHQNDTKST ETTNKTSQIQ  180
DPPNPMLSSE TQKISNDLMD DTKSFNYKIE NPIMATNSST FVFDDEPLPI ITYMDSFVCF  240
EAFGHTAGLE NHAKIGRQSV FP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22461487108B-MYB
1h8a_C2e-224614827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112475.15e-97transcription factor MYB82
SwissprotQ9LTF71e-65MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A2P5FPY31e-117A0A2P5FPY3_TREOI; MYB transcription factor
STRINGXP_010112475.12e-96(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.15e-68myb domain protein 82