PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00568.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 280aa    MW: 30908.5 Da    PI: 7.9175
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00568.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.2e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+e l  +v+++G+g Wk I r         +R+  ++k++w++
        PK00568.1  5 KQKWTSEEEEALRAGVAKHGTGKWKDIQRDPEfnpylVNRSNIDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.327160IPR017930Myb domain
SuperFamilySSF466897.9E-17258IPR009057Homeodomain-like
SMARTSM007173.3E-7459IPR001005SANT/Myb domain
PfamPF002491.5E-9555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-15556IPR009057Homeodomain-like
CDDcd116601.50E-22656No hitNo description
SMARTSM005264.5E-17100181IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.935118186IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.2E-14120186IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.29E-15121191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.2E-10122179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGTGKWKD IQRDPEFNPY LVNRSNIDLK DKWRNMSCSA  60
NGQGPREKSR TVKAKANSDA PASQVSTPQT AVPVPAARDS AAVPSTDDST KALPDGKNSS  120
MYNTMIFEAL STLKEPNGSD TSAIVSYIEQ RHEVPQNFRR LLSTRLRRLV SQDKLEKVQN  180
CYKVKSNVDA SFGTKTPALK AENQPRPLQT TVYRTTTDVV DEAGNAAYKI AEAENKSFVA  240
AEAVKEADRI SEMAEDTESL LQLAKEIFEK CSQGECVYTA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090083.21e-138telomere repeat-binding factor 4
TrEMBLA0A2P5EFW31e-168A0A2P5EFW3_TREOI; Telomeric repeat-binding factor
STRINGXP_010090083.11e-133(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-65MYB_related family protein