PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00408.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 727aa    MW: 78004.5 Da    PI: 6.1506
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00408.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.4e-32299355259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh 
  PK00408.2 299 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHA 355
                7****************************************.***************7 PP
2WRKY102.81.9e-32523581159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  PK00408.2 523 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 581
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.986293357IPR003657WRKY domain
SuperFamilySSF1182907.06E-25297357IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-27297357IPR003657WRKY domain
SMARTSM007741.8E-35298356IPR003657WRKY domain
PfamPF031062.4E-24299354IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-37508583IPR003657WRKY domain
SuperFamilySSF1182901.96E-28515583IPR003657WRKY domain
PROSITE profilePS5081138.32518583IPR003657WRKY domain
SMARTSM007741.9E-37523582IPR003657WRKY domain
PfamPF031067.5E-25524581IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MAGLDDNVAI IGDWVPPSPS SRAFFSAMLG EDIGSRQFSG TTHNKTEDLF PNNNNNNNNN  60
FKEFREMGSF SSEQKSNSRG GGLVDRIAAR AGFNAPRLNT ESMRSSSSDL SLAASESRSP  120
YLTIPPGLSP TTLLDSPVFL SNSLAQPSPT TGKFPFASSN GNTRSSTLIM EASDRNKESF  180
FEDINAGSFA FKPVPNSGPS SSFFLGTATK MTSAAAMPPH PHPSYPNIEM SVQSENSPPQ  240
SVGGGNEKDS SSDQKGGELE LSPPLEEQGE EEGDQKGSGG DCSAGGGGGG GGGGGTISED  300
GYNWRKYGQK QVKGSEYPRS YYKCTHPNCQ VKKKVERSHE GHITEIIYKG AHNHAKPSHR  360
RSGIGSSSNP LADMRMDIQE QAGMQNGNVN VNCGGGDGDP VWASTQKGTV VDWRNDSLEV  420
TSSASASAGP EYCNQSTSLQ AQNGTQLESV DAVVDASSTF SNDEDEDDRG THGSASLGYE  480
GEEDESESKR RKLEAFATEM SGATRAIREP RVVVQTTSEV DILDDGYRWR KYGQKVVKGN  540
PNPRSYYKCT NAGCTVRKHV ERASHDLKSV ITTYEGKHNH DVPAARNSSH VNSGPSMQLQ  600
GSASTAMQSH VHRPEPSSQQ LHNNMGRLSS YSLPRQQLGN FSFGMNQAGL ANLAMAGLGS  660
MPPKLQGMPM NPYLAQQQQR QANEMSFMLP KGEPKAEPIS ESATGLNLSN ASVYQQFMSR  720
LPLGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-37297584878Probable WRKY transcription factor 4
2lex_A7e-37297584878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021826759.10.0probable WRKY transcription factor 2
RefseqXP_021826760.10.0probable WRKY transcription factor 2
RefseqXP_021826761.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A314Y5Z50.0A0A314Y5Z5_PRUYE; Putative WRKY transcription factor 2
STRINGXP_008246415.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-169WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]