PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10028614m

Common Name

CARUB_v10028614mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C2H2

Protein Properties

Length: 292aa MW: 32436 Da PI: 5.6775

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10028614m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	8e-05	10	31	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+ksFs+ L H+++H Carubv10028614m 10 TCQVCKKSFSNGKALGGHMKSH 31 6*******************99 PP
2	zf-C2H2	11.7	0.00077	255	277	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F + L H ++H Carubv10028614m 255 YECQICNRVFESGQALGGHKKVH 277 99**********99999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.14	9	31	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.076	9	36	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.02E-7	10	31	No hit	No description
Pfam	PF13912	1.7E-8	11	32	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	11	31	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.02E-7	208	235	No hit	No description
SMART	SM00355	0.15	213	235	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.367	213	240	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.6E-8	213	236	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	215	235	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.99E-5	253	278	No hit	No description
Pfam	PF13912	8.3E-12	254	278	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.028	255	277	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.408	255	277	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	257	277	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MYPLLNQEKT CQVCKKSFSN GKALGGHMKS HTRQFSAELS TGSSLPSLRP RNNLGANFRR 60 PHETVLMRSA LTNEAASGRT PDLTKEGEQE VTAAKGKIFI DLEEEISTES LCGITSEQNA 120 LCLLQMKTMW SGQNPKSTKE GKDTEEYMEI DSEEDVEDSD DEYVAEEQED NEDGDVKFLT 180 SDVGYLTADS DEYADENAYY GTKERRGKKQ SKYMCDICGK VLRSHQALGG HRTSHRNKRL 240 KISGEDGSVV VGKRYECQIC NRVFESGQAL GGHKKVHYAF LSPINFSTSA K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10028614m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006279551.1	0.0	zinc finger protein ZAT9
TrEMBL	R0G7H6	0.0	R0G7H6_9BRAS; Uncharacterized protein
STRING	XP_006279551.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14171	15	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61470.1	5e-87	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Carubv10028614m
Entrez Gene	17876571