PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028409m
Common NameCARUB_v10028409mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 263aa    MW: 29911.2 Da    PI: 4.442
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028409mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444e-1410782897
                     --..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3 28 gkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                     ++++ +kt+t++++ g+ W++ l  rk++g+   +vl +GWk+ vk+ +L+ gD + F++dg+++f  +++++
  Carubv10028409m 10 LPNPLPKTVTIRSTYGKIWNMVL--RKCGGEverFVLVNGWKKIVKDEDLNGGDLLAFEFDGSRCF--NFSIY 78
                     4567899****************..777766677***************************99999..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.6E-6181IPR003340B3 DNA binding domain
PROSITE profilePS5086314.099181IPR003340B3 DNA binding domain
SuperFamilySSF1019361.92E-15179IPR015300DNA-binding pseudobarrel domain
CDDcd100178.48E-12178No hitNo description
PfamPF023621.5E-11278IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-12280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-7162256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-9163257IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.068169258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
VLPISFNCCL PNPLPKTVTI RSTYGKIWNM VLRKCGGEVE RFVLVNGWKK IVKDEDLNGG  60
DLLAFEFDGS RCFNFSIYEH ETMCKRVKRS SEQNLESDGE EETRTSNDVI VLHDDDTDDS  120
DSDYHHASVE DDDDAEDEDV EPEPEDDAEN EHDDDVEDED KDDHRNPQFT VTLNPNRKSQ  180
LHIPAHVIRD FDLTFPERIT VVDKLGALEK EIKIQVNGCI FVKGFGSVFR RNKVKTTDQM  240
ICEVKRTGAN VVHTIKVNVI RG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028409m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282152.20.0B3 domain-containing protein At5g60140
SwissprotQ9FHB01e-114Y5014_ARATH; B3 domain-containing protein At5g60140
TrEMBLR0GRU60.0R0GRU6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006282152.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.24e-83B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]