PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028333m
Common NameCARUB_v10028333mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WOX
Protein Properties Length: 262aa    MW: 29259.3 Da    PI: 9.3361
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028333mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.4e-201372357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+++tk+q++ Le+l+++  r+psa+++++++ +l    +++ ++V++WFqN++a++++
  Carubv10028333m 13 SRWNPTKDQITLLENLYKQgIRTPSADQIQQITGRLraygHIEGKNVFYWFQNHKARQRQ 72
                     8*****************99**************************************97 PP
2Wus_type_Homeobox1153.6e-371174265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +++RW+Pt++Qi++Le+lyk+G+rtP++++iq+it +L++yG+ie+kNVfyWFQN+kaR+rqkq
    Carubv10028333m 11 SSSRWNPTKDQITLLENLYKQGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQKQ 74
                       579***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.41E-12479IPR009057Homeodomain-like
PROSITE profilePS5007110.738873IPR001356Homeobox domain
SMARTSM003892.3E-51077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-71372IPR009057Homeodomain-like
PfamPF000466.9E-181372IPR001356Homeobox domain
CDDcd000866.94E-61474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MENEGNTGTG SSSRWNPTKD QITLLENLYK QGIRTPSADQ IQQITGRLRA YGHIEGKNVF  60
YWFQNHKARQ RQKQKQERIA YFNRLLHKTS RFFHPPPCSN VGCVSPYYIQ QVGDHHNHIN  120
QHGSVYTNNL LHRNNAVIPS GGYEKRSITD HNKKKQLSDI TTRTTTTRMS MSSRFDRFAL  180
RDHGEGINVN SNGRETLPLF PLQPLDGTIG DGAENSSFAT GSDPPVVCLG DDGGQEQPFM  240
IDFFSGGGSS SSRFDNNGNA L*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028333m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937991e-145AB493799.1 Arabidopsis thaliana At5g59340 mRNA for hypothetical protein, partial cds, clone: RAAt5g59340.
GenBankAY2513921e-145AY251392.1 Arabidopsis thaliana clone 1 WOX2 protein mRNA, complete cds.
GenBankAY2513931e-145AY251393.1 Arabidopsis thaliana clone 2 WOX2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282087.10.0WUSCHEL-related homeobox 2
SwissprotQ6X7K11e-145WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLR0GRL90.0R0GRL9_9BRAS; Uncharacterized protein
STRINGXP_006282087.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-131WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]