PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10028256m | ||||||||
Common Name | CARUB_v10028256mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 138aa MW: 15404.2 Da PI: 8.9981 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.4e-05 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Carubv10028256m 33 YECTFCKRGFTNAQALGGHMNIH 55 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.1E-5 | 25 | 58 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.68E-7 | 30 | 60 | No hit | No description |
PROSITE profile | PS50157 | 11.136 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0097 | 33 | 55 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MECERSSSST SSDTGAVRHR HTSSSSTVTR RMYECTFCKR GFTNAQALGG HMNIHRRDRL 60 NKAKVQNDAD VALSQARRCF HVASDRGGYE QVDSVVMRTT TTTSNYIQHL RIGSMATRRE 120 HVVVEGDEID LELRLGL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10028256m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016875 | 1e-139 | AB016875.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9D7. | |||
GenBank | CP002688 | 1e-139 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282017.1 | 7e-97 | zinc finger protein JAGGED | ||||
TrEMBL | R0GRE6 | 2e-95 | R0GRE6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006282017.1 | 3e-96 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9168 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 1e-69 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10028256m |
Entrez Gene | 17875489 |