PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028109m
Common NameCARUB_v10028109mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 372aa    MW: 43239.6 Da    PI: 8.1236
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028109mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-1810104198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      ffkv+     ++s+ lv+p  f++   gk + +k+  l de gr W+v+++ + + +r  + ++kGW+ F+k++ L+ gDf+vF++dg s+f  
  Carubv10028109m  10 FFKVF--LPEFSSHELVIPPAFIDLLVGK-PLPKEAFLLDEIGRLWRVEIKTEDTEERfcVSFQKGWECFAKDQSLEFGDFLVFSYDGGSRF-- 98 
                      88999..889999**********766544.5999****************8877777778999************************98999.. PP

                      EEEEE- CS
               B3  93 vvkvfr 98 
                       v++f 
  Carubv10028109m  99 SVTIFA 104
                      888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.6488106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-209106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-199106IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-1610104IPR003340B3 DNA binding domain
SMARTSM010194.5E-2110106IPR003340B3 DNA binding domain
CDDcd100171.33E-1610103No hitNo description
Gene3DG3DSA:2.40.330.101.6E-13216317IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-14217305IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.432221319IPR003340B3 DNA binding domain
SMARTSM010191.9E-6224319IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVETGKDLEF FKVFLPEFSS HELVIPPAFI DLLVGKPLPK EAFLLDEIGR LWRVEIKTED  60
TEERFCVSFQ KGWECFAKDQ SLEFGDFLVF SYDGGSRFSV TIFAKDGTKK DVGVVATTER  120
SRVSLEKDPV HIFTKPERRK DCKRKREHDS VLDKPEYVST SKTKPGHREK IQRTTVNRAG  180
VKWFNLNHVF VRCCYNVDPC DISWSSDSED GFEESVYKPK NPHFLRNITC SSFHKLEIPI  240
TFLRSNGIEL EEEIELCDED GKKWPLKVEN HVRGLRFSCE TWSCFSKGHK LMKNHKFLLE  300
FVASSGRCKE IQVRVVKEVI CVYSPEKSTK RDGFRIIKVY LSSFIFYTHQ PSIFVFEEYR  360
SSLKKEAITC R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028109m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632897.10.0putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-141Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLR0GUD30.0R0GUD3_9BRAS; Uncharacterized protein
STRINGXP_006281905.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-131B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]