PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10027834m

Common Name

CARUB_v10027834mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

G2-like

Protein Properties

Length: 266aa MW: 29520.2 Da PI: 9.0943

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10027834m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.7	5.5e-33	7	61	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Carubv10027834m 7 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 61 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.285	4	64	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-31	4	63	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-16	7	64	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-24	7	62	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	9	60	IPR001005	SANT/Myb domain
Pfam	PF14379	3.8E-19	113	158	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MMTRDPKPRL RWTADLHDRF VDAVAKLGGA DKATPKSVLK LMGLKGLTLY HLKSHLQKYR 60 LGQQQGKKQN RSDQNKENAG SSYVHFDNCS QGGISNESRF DSGHHRQSGN VPFAEAMRHQ 120 VDAQQRFQEQ LEVQKRLQMR MEAQGKYLLT LLEKAQKSIP CGNAAETDKG QFSDFNLALS 180 GLVGDDHKSQ KAVGLVTNIL HLNGDSSEDF RLCGEQEKIE TGDAGVKPES GFVHFDLNSK 240 SGFDLLNSGN YGIEMKPNVI ANRHP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-20	7	60	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-20	7	60	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-20	7	60	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-20	7	60	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10027834m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493777	0.0	AB493777.1 Arabidopsis thaliana At5g45580 mRNA for hypothetical protein, partial cds, clone: RAAt5g45580.
GenBank	BT012003	0.0	BT012003.1 Arabidopsis thaliana At5g45580 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006281686.2	0.0	myb family transcription factor PHL11
Swissprot	C0SVS4	1e-174	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	R0GD26	0.0	R0GD26_9BRAS; Uncharacterized protein
STRING	XP_006281686.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12495	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-177	G2-like family protein

Link Out ? help Back to Top
Phytozome	Carubv10027834m
Entrez Gene	17877071

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]