PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027759m
Common NameCARUB_v10027759mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 225aa    MW: 24963.9 Da    PI: 5.4238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027759mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-1854103255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f t e+Aa+a++ a+++l+g
  Carubv10027759m  54 IYRGVRQRN-SGKWVCEVREP---NKKSRIWLGTFPTVEMAARAHDVAALALRG 103
                      69****999.7******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-1453103IPR001471AP2/ERF domain
CDDcd000183.10E-3253113No hitNo description
SuperFamilySSF541712.55E-2154113IPR016177DNA-binding domain
PROSITE profilePS5103222.24754111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3254113IPR001471AP2/ERF domain
SMARTSM003806.8E-3154117IPR001471AP2/ERF domain
PRINTSPR003678.4E-95566IPR001471AP2/ERF domain
PRINTSPR003678.4E-97793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MNPFSSAFSD SFLSISSDHR SPVSDSSECS PKLASSCPKK RAGRKKFRET RHPIYRGVRQ  60
RNSGKWVCEV REPNKKSRIW LGTFPTVEMA ARAHDVAALA LRGRSACLNF ADSAWRLRIP  120
ETTCPKEIQK AAAEAAMAFQ NESVTTEGSK TAVVEGEVAV SEGERMVEEQ SQSGVFFMDE  180
EDVFGFPKFF ENMAEGMLLP PPELGWNHND FDGDGDVSLW NFND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-14521101271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027759m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5231690.0EF523169.1 Arabidopsis thaliana ecotype Oy-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231700.0EF523170.1 Arabidopsis thaliana ecotype Yo-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231710.0EF523171.1 Arabidopsis thaliana ecotype Ag-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231720.0EF523172.1 Arabidopsis thaliana ecotype Ak-1 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231740.0EF523174.1 Arabidopsis thaliana ecotype Bs-1 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231750.0EF523175.1 Arabidopsis thaliana ecotype Gre-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231760.0EF523176.1 Arabidopsis thaliana ecotype Co-1 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231770.0EF523177.1 Arabidopsis thaliana ecotype Can-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231780.0EF523178.1 Arabidopsis thaliana ecotype Cvi-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231790.0EF523179.1 Arabidopsis thaliana ecotype Kin-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231800.0EF523180.1 Arabidopsis thaliana ecotype Lip-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231810.0EF523181.1 Arabidopsis thaliana ecotype Pog-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231820.0EF523182.1 Arabidopsis thaliana ecotype Van-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231830.0EF523183.1 Arabidopsis thaliana ecotype Bla-1 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231850.0EF523185.1 Arabidopsis thaliana ecotype Hau-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231860.0EF523186.1 Arabidopsis thaliana ecotype Mv-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231880.0EF523188.1 Arabidopsis thaliana ecotype Bur-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231890.0EF523189.1 Arabidopsis thaliana ecotype Per-3 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231910.0EF523191.1 Arabidopsis thaliana ecotype Sapporo-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231920.0EF523192.1 Arabidopsis thaliana ecotype Tscha-1 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281628.11e-166dehydration-responsive element-binding protein 1D isoform X1
SwissprotQ9FJ931e-135DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLR0EZY91e-165R0EZY9_9BRAS; Uncharacterized protein
STRINGXP_006281628.11e-166(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-100C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]