PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027735m
Common NameCARUB_v10027735mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WOX
Protein Properties Length: 364aa    MW: 40699.7 Da    PI: 7.1502
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027735mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-1753113257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      ++R+++++eq+++Le+ F++   +p +ee++++  +l    ++ +++V++WFqNr+ + k+
  Carubv10027735m  53 KPRWNPKPEQIRILESIFNSgIVNPPREEIQRIRIRLqeygQIGDANVFYWFQNRKSRAKH 113
                      89*****************99*************************************995 PP
2Wus_type_Homeobox110.59.5e-3652114264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P++eeiqri+ +L+eyG+i+d+NVfyWFQNrk+R ++k
    Carubv10027735m  52 PKPRWNPKPEQIRILESIFNSGIVNPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHK 114
                        579**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.17149114IPR001356Homeobox domain
SMARTSM003894.7E-751118IPR001356Homeobox domain
SuperFamilySSF466891.03E-1151116IPR009057Homeodomain-like
CDDcd000869.89E-852114No hitNo description
Gene3DG3DSA:1.10.10.603.1E-653113IPR009057Homeodomain-like
PfamPF000463.4E-1553113IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSSSSNKNWP SMFKSKPCNN NHHQHDIDSP SYMHYSNCNT SSSFSSDRVP DPKPRWNPKP  60
EQIRILESIF NSGIVNPPRE EIQRIRIRLQ EYGQIGDANV FYWFQNRKSR AKHKLRVHHK  120
SPKMSKKDKI ISPGIDADHC FGLVNQETGL FPVQNNEMVV TEPAGYHLSP VQNYPSPVQS  180
GFGFGDFVAP VVMDKDVAFP TVNNGLENVE SLDKTPAINF YGGDGNHGGE NYFTQVPLTT  240
NLSQERAVVL HGAGEDVEDS VTPEKLTVFI NDMLFEVAAG LFNVKQAFGN NAILINSFGH  300
PVLTDENGVT FQSLQNGAVY YLVFRRLMTP MCEISTSMGM RDRERKKSQT VVYLSRSSES  360
SGT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027735m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:22427333}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640913.10.0WUSCHEL-related homeobox 8
SwissprotQ6X7J51e-173WOX8_ARATH; WUSCHEL-related homeobox 8
TrEMBLR0EV120.0R0EV12_9BRAS; Uncharacterized protein
STRINGXP_006279758.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142621619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.11e-159WUSCHEL related homeobox 8
Publications ? help Back to Top
  1. Xiao W, et al.
    DNA methylation is critical for Arabidopsis embryogenesis and seed viability.
    Plant Cell, 2006. 18(4): p. 805-14
    [PMID:16531498]
  2. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  3. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
    J. Exp. Bot., 2014. 65(22): p. 6543-52
    [PMID:25205582]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]