PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10027554m

Common Name

CARUB_v10027554mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C2H2

Protein Properties

Length: 372aa MW: 41871.2 Da PI: 7.0891

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10027554m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	308	330	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ +F+++ + H+ +H Carubv10027554m 308 YTCPKCNCVFNTSQKFAAHMLSH 330 9*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0062	308	330	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.182	308	335	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	310	330	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MSYNPNMFSI YGDDFINHSQ LVSNEMNQNS ITVRSLFTTP DHMNYSNFFA SSPSFSPFQN 60 SQNSSSSFPF NFGSVSGAEY FPNDSVQYEI ERVNRAMDSN PNTWIPVFLP PNILSHQNTI 120 LNATPISVVY PDQDHAARYS VARHYSDARH YSVAPHHFGA SNHLVAPHHS AVPHHFDALH 180 PSAAPHHSAA LHISAPPHHS AISHHSNPNT WTPAFIPPNI FGNQHTILNP TPIRVMYPDQ 240 DLVAHHYSAA PHHSATTHHL VAPDHFTAPN HFDAPHHSDT ISVLSTEDDD ESDDGRTHSI 300 PCEKNGPYTC PKCNCVFNTS QKFAAHMLSH YKSETNEEKD RRLRARNRKK YRKFMASLRR 360 PKEKMELVAI E*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MSYNPNMFSI YGDDFINHSQ LVSNEMNQNS ITVRSLFTTP DHMNYSNFFA SSPSFSPFQN  60
SQNSSSSFPF NFGSVSGAEY FPNDSVQYEI ERVNRAMDSN PNTWIPVFLP PNILSHQNTI  120
LNATPISVVY PDQDHAARYS VARHYSDARH YSVAPHHFGA SNHLVAPHHS AVPHHFDALH  180
PSAAPHHSAA LHISAPPHHS AISHHSNPNT WTPAFIPPNI FGNQHTILNP TPIRVMYPDQ  240
DLVAHHYSAA PHHSATTHHL VAPDHFTAPN HFDAPHHSDT ISVLSTEDDD ESDDGRTHSI  300
PCEKNGPYTC PKCNCVFNTS QKFAAHMLSH YKSETNEEKD RRLRARNRKK YRKFMASLRR  360
PKEKMELVAI E*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10027554m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006281471.2	0.0	soluble scavenger receptor cysteine-rich domain-containing protein SSC5D
TrEMBL	R0GCH8	0.0	R0GCH8_9BRAS; Uncharacterized protein
STRING	XP_006281471.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1924	19	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18490.1	2e-28	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Carubv10027554m
Entrez Gene	17874949